Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30091
         (864 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0213 + 26815889-26816475,26817718-26817788,26817985-268180...    52   8e-07
08_01_0352 + 3102552-3105243,3105684-3105748,3105824-3106492           30   2.7  

>02_05_0213 +
           26815889-26816475,26817718-26817788,26817985-26818073,
           26818910-26818991,26819089-26819204,26819290-26819451,
           26819531-26819680,26819969-26820037,26820375-26820491
          Length = 480

 Score = 51.6 bits (118), Expect = 8e-07
 Identities = 31/84 (36%), Positives = 41/84 (48%)
 Frame = +1

Query: 4   LXXXRRRTIRXPMNKLMEVGPDKFSFPSGHASRAVLISFILIYFDSVSIIFYPPLMAWVV 183
           L   R R      +  + V  D +SFPSGH+SRA L++  L    +        L  W  
Sbjct: 103 LIVRRPRPAYNAADMYVAVAADHWSFPSGHSSRAFLVAAFL----AAGGFPREALFLWAA 158

Query: 184 SVSISRVLAERHYLLDSIGGVGIG 255
           S S SRVL  RHY+LD + G  +G
Sbjct: 159 STSASRVLLGRHYVLDVVAGACLG 182


>08_01_0352 + 3102552-3105243,3105684-3105748,3105824-3106492
          Length = 1141

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 23/80 (28%), Positives = 36/80 (45%)
 Frame = +1

Query: 157 YPPLMAWVVSVSISRVLAERHYLLDSIGGVGIGFLKVSSCPSYGCPKVHLLVFCHHCLMK 336
           YP L A +  +   R L     +L + G  G+ F +  S P     K+HL    HH +M+
Sbjct: 719 YPKLFASISKMRSLRTLK----VLSAEGNQGLNF-EALSLPPQNLRKLHLTGRFHHAVME 773

Query: 337 N*MVENTMYKHKKMY*TFRK 396
           +   +    K +K+Y T  K
Sbjct: 774 SNFFQTVGAKLEKLYLTGSK 793


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,799,687
Number of Sequences: 37544
Number of extensions: 337998
Number of successful extensions: 606
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)