Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30091
         (864 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39648-9|AAM15605.1|  186|Caenorhabditis elegans Hypothetical pr...    56   3e-08
Z68105-4|CAA92120.2|  304|Caenorhabditis elegans Hypothetical pr...    31   1.4  

>U39648-9|AAM15605.1|  186|Caenorhabditis elegans Hypothetical
           protein T13C5.6 protein.
          Length = 186

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 30/83 (36%), Positives = 52/83 (62%)
 Frame = +1

Query: 16  RRRTIRXPMNKLMEVGPDKFSFPSGHASRAVLISFILIYFDSVSIIFYPPLMAWVVSVSI 195
           R R I+   +KL+E   D +SFPSGH+SRA ++  ++ Y  + + ++  P + + + V +
Sbjct: 88  RERPIKT-YSKLLEHTVDIYSFPSGHSSRAAML-LVMAY--NAAPLYVIPFIPFPLVVGL 143

Query: 196 SRVLAERHYLLDSIGGVGIGFLK 264
           SRV   RHY+ D + G+ IG+L+
Sbjct: 144 SRVALGRHYITDVLAGIFIGYLE 166


>Z68105-4|CAA92120.2|  304|Caenorhabditis elegans Hypothetical
           protein F13E6.5 protein.
          Length = 304

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 13/70 (18%)
 Frame = +1

Query: 76  SFPSGHASRAV-LISFILIYF----------DSVSI--IFYPPLMAWVVSVSISRVLAER 216
           SFPSGH + A  +  F+ IY           + ++I  I  P    W V  +++RV    
Sbjct: 198 SFPSGHTAAAFHVFLFVYIYLRRMAENTGIKEIITIRNILVPSYALWTVFCAVTRVTDNW 257

Query: 217 HYLLDSIGGV 246
           H+  D +GGV
Sbjct: 258 HFPTDVLGGV 267


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,191,999
Number of Sequences: 27780
Number of extensions: 297771
Number of successful extensions: 460
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)