Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30090
         (801 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53139-13|AAK18939.1|  334|Caenorhabditis elegans Hypothetical p...    32   0.42 
AB275892-1|BAF34315.1|  334|Caenorhabditis elegans D-aspartate o...    32   0.42 
AC006644-5|AAF39834.1|  786|Caenorhabditis elegans Hypothetical ...    29   5.1  
Z81529-3|CAB04300.1|  224|Caenorhabditis elegans Hypothetical pr...    28   8.9  
Z81529-1|CAB04294.1|  224|Caenorhabditis elegans Hypothetical pr...    28   8.9  
AF016687-5|AAC48093.1|  709|Caenorhabditis elegans Hypothetical ...    28   8.9  
AF016686-9|AAB66242.1|  300|Caenorhabditis elegans Hypothetical ...    28   8.9  

>U53139-13|AAK18939.1|  334|Caenorhabditis elegans Hypothetical
           protein F18E3.7a protein.
          Length = 334

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = -3

Query: 373 KQLEKWSWSQPEMRHKRTMVQRRTNMLGQ*HMSMLVQQHKDGRSSNGLSEDWSSTV 206
           K +++WS  +P  +H R   Q+RT+ +G     M+V  H  G  SNG +  W + +
Sbjct: 270 KIIKEWSALRPGRKHVRIEAQKRTS-VGNSKDYMVV--HHYGHGSNGFTLGWGTAI 322


>AB275892-1|BAF34315.1|  334|Caenorhabditis elegans D-aspartate
           oxidase protein.
          Length = 334

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = -3

Query: 373 KQLEKWSWSQPEMRHKRTMVQRRTNMLGQ*HMSMLVQQHKDGRSSNGLSEDWSSTV 206
           K +++WS  +P  +H R   Q+RT+ +G     M+V  H  G  SNG +  W + +
Sbjct: 270 KIIKEWSALRPGRKHVRIEAQKRTS-VGNSKDYMVV--HHYGHGSNGFTLGWGTAI 322


>AC006644-5|AAF39834.1|  786|Caenorhabditis elegans Hypothetical
           protein F55A3.2 protein.
          Length = 786

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +3

Query: 285 YWPSIFVRRCTIVRLCRISGCDQDHFSSCFLSIFLLVHNRSWITIFR 425
           YW SIF+R C I  LC+ +      +S  F       H +  IT F+
Sbjct: 589 YWLSIFLRSCGIDWLCKSNNICSAAWSLVFRDSNKTSHQQYAITYFK 635


>Z81529-3|CAB04300.1|  224|Caenorhabditis elegans Hypothetical
           protein F35E8.4 protein.
          Length = 224

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
 Frame = +3

Query: 288 WPSIFVRRC-TIVRLCRISGCDQDHFSSCF--LSIFLLVHNRSWITIFRNILCSRCSSHR 458
           W ++  + C +    C   GC  D  + C   LSI L V  + ++  +    C RCS+  
Sbjct: 115 WRTVIAQDCPSACGFCNEGGC-VDAITDCGDDLSICLNVKMQDFVNQYCQKTCKRCSAAT 173

Query: 459 AHTPP 473
              PP
Sbjct: 174 TVAPP 178


>Z81529-1|CAB04294.1|  224|Caenorhabditis elegans Hypothetical
           protein F35E8.1 protein.
          Length = 224

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
 Frame = +3

Query: 288 WPSIFVRRC-TIVRLCRISGCDQDHFSSCF--LSIFLLVHNRSWITIFRNILCSRCSSHR 458
           W ++  + C +    C   GC  D  + C   LSI L V  + ++  +    C RCS+  
Sbjct: 115 WRTVIAQDCPSACGFCNEGGC-VDAITDCGDDLSICLNVKMQDFVNQYCQKTCKRCSAAT 173

Query: 459 AHTPP 473
              PP
Sbjct: 174 TVAPP 178


>AF016687-5|AAC48093.1|  709|Caenorhabditis elegans Hypothetical
           protein T21D12.11 protein.
          Length = 709

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 221 LEQHRRQRCGHRERCELSKKRP 156
           +E HRR+RC  ++RC  + + P
Sbjct: 320 VECHRRRRCSRKQRCHTTTQPP 341


>AF016686-9|AAB66242.1|  300|Caenorhabditis elegans Hypothetical
           protein R07C3.13 protein.
          Length = 300

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +3

Query: 294 SIF-VRRCTIVRLCRISGCDQDHFSSCFLSIFLLVHNRSWITIFRNILCSRCSSHRA 461
           S+F ++R    R    S C Q HF   FLS F++   RSW+  F   + S     +A
Sbjct: 60  SVFSIKRTRRCRCLLPSKCFQAHF---FLSCFVVCGQRSWLLSFSITVASSAEELKA 113


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,662,040
Number of Sequences: 27780
Number of extensions: 311471
Number of successful extensions: 802
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)