Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30090
         (801 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.4  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    24   1.9  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    24   1.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.3  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   3.3  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 640 LRKNHHGAVVTGVR*HRRYCRTDGLGEQPQVQRKLQRERSP 518
           L+ +HH    T V+ H R  +     +Q Q QR+ +R   P
Sbjct: 144 LQNHHHHLQSTAVQDHHRPYQQQQQQQQRQQQRQEERRLRP 184


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 12/18 (66%), Positives = 12/18 (66%), Gaps = 2/18 (11%)
 Frame = -3

Query: 628 HHGAVVTGVR*HR--RYC 581
           H G VVTGV  HR  RYC
Sbjct: 515 HSGEVVTGVIGHRMPRYC 532


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 12/18 (66%), Positives = 12/18 (66%), Gaps = 2/18 (11%)
 Frame = -3

Query: 628 HHGAVVTGVR*HR--RYC 581
           H G VVTGV  HR  RYC
Sbjct: 515 HSGEVVTGVIGHRMPRYC 532


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +3

Query: 474 TLH--PQLRRTPRLRC*GDRSRCSLRCTCGCSPRPSV 578
           T+H  P+++ TPR +    +   ++RC     P P V
Sbjct: 397 TIHTIPEVKVTPRFQAKRLKEEANIRCHVAGEPLPRV 433


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 675 LGRYSRGQR*SPSVRTTMGLLLQE*DDTEDTAEL 574
           LGR   G+    S   T  L+ +E +D EDT  L
Sbjct: 31  LGRDDGGKSRQSSFEVTSLLMREETEDAEDTQTL 64


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,860
Number of Sequences: 438
Number of extensions: 3846
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)