Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30089
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.07c |alp31||tubulin specific chaperone cofactor A |Schi...    44   3e-05
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   2.1  
SPAC2C4.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.8  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    26   5.0  
SPAC14C4.08 |mug5||meiotically upregulated gene Mug5|Schizosacch...    26   6.6  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    26   6.6  
SPCC737.04 |||S. pombe specific UPF0300 family protein 6|Schizos...    25   8.7  

>SPAC8E11.07c |alp31||tubulin specific chaperone cofactor A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 26/75 (34%), Positives = 37/75 (49%)
 Frame = +1

Query: 22  IRQIKIKTGVVKRIXXXXXXXXXXXXLQKNRIQRIKDEGQDEHNIRKQEEVLQESLMMVP 201
           +R + IKT VVKRI              + R+Q   D G+D   I  Q+ VL++ L  +P
Sbjct: 5   VRSLVIKTNVVKRIIKDVELAHIDINEAEKRVQSKIDNGEDSAEIEHQKFVLKKHLEALP 64

Query: 202 DCQRRLIKAYTDLKT 246
           D   RL  A  DL++
Sbjct: 65  DALVRLRNATNDLES 79


>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 233

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/32 (40%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
 Frame = +3

Query: 198 SRLSKEINQSI-YRSQNYFRTEQDLKEHEEYI 290
           S+LSK+  +S+ YRS+ + +  Q L+EHE+ +
Sbjct: 3   SKLSKKKLKSLEYRSKKFDKKSQSLEEHEKKV 34


>SPAC2C4.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 166

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/40 (27%), Positives = 25/40 (62%)
 Frame = +3

Query: 198 SRLSKEINQSIYRSQNYFRTEQDLKEHEEYITAEQVLKDA 317
           +++ KE++ S  R +  F+T Q+L+E  ++ ++    KD+
Sbjct: 17  NKMQKELDLSFERYERLFKTTQELQEKVKFSSSRFYNKDS 56


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = +3

Query: 174 SSGVPDDGSRLSKEINQSIYRSQNYFRTEQDLKEHEEYITAEQVLKDAEPQLPAIES 344
           S  V  DG+R S    + +YR  +Y  TE D  EHE  I  ++  K A  Q  ++ S
Sbjct: 93  SDDVRVDGTRRSSRAKRPVYRDFSY--TEID--EHEIPIPKKRKSKPAPKQKKSVAS 145


>SPAC14C4.08 |mug5||meiotically upregulated gene
           Mug5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 179

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 243 NYFRTEQDLKEHEEYITAEQVLKDA-EPQLPAIES*LSPFY 362
           N+F    DLK  EEY T+  VL    + QL  I + +  +Y
Sbjct: 103 NFFSLSNDLKRLEEYNTSCSVLLSLYQRQLKKISTTIESYY 143


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 23/82 (28%), Positives = 32/82 (39%)
 Frame = +1

Query: 106 KNRIQRIKDEGQDEHNIRKQEEVLQESLMMVPDCQRRLIKAYTDLKTTLEQNRTSKNTRN 285
           K  +  I   G DEH ++ Q     E +  +  C R   K + DL         + NT+ 
Sbjct: 55  KPDVSVISSTGTDEHGLKVQTVAQTEGVSPLQLCDRN-SKRFADL-------AVAANTKF 106

Query: 286 TLPLNRFSRTLNPSFQPSSHNY 351
           T     F RT NP  Q S   +
Sbjct: 107 T----HFIRTTNPKHQASVQEF 124


>SPCC737.04 |||S. pombe specific UPF0300 family protein
           6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +1

Query: 115 IQRIKDEGQDEHNIRKQEEVLQESLMMVPDCQRRLIKAYTDLKTTLEQN 261
           ++ + DEGQ+   +RK    +Q+     P  Q R  +  +  K T + N
Sbjct: 12  LREVDDEGQENSFLRKTTRKIQQFFKSDPGYQSRKAEYNSPAKATGDVN 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,308,610
Number of Sequences: 5004
Number of extensions: 36921
Number of successful extensions: 119
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)