Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30088
(622 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1220 + 35021495-35021647,35022819-35022905,35022988-35023086 52 3e-07
07_03_0434 + 18175560-18175695,18176068-18176177,18176553-181766... 30 1.7
03_05_0642 - 26346260-26346367,26347902-26348162,26348542-263498... 29 3.9
04_04_1542 - 34264994-34265331,34266195-34267029 28 5.2
02_05_1276 + 35397948-35398298,35398937-35401738,35402085-354023... 28 5.2
05_01_0199 + 1434040-1434414,1434808-1435127,1435889-1435928 28 6.9
02_03_0018 - 13978247-13978717 28 6.9
01_03_0116 - 12665212-12665241,12665555-12666307 28 6.9
10_07_0063 - 12502305-12503361,12503567-12503668,12504251-125043... 27 9.1
01_01_0667 + 5099026-5099188,5099262-5099661,5099748-5100648 27 9.1
01_01_0595 - 4430738-4430785,4430904-4432679 27 9.1
>02_05_1220 + 35021495-35021647,35022819-35022905,35022988-35023086
Length = 112
Score = 52.4 bits (120), Expect = 3e-07
Identities = 26/73 (35%), Positives = 40/73 (54%)
Frame = +3
Query: 51 CERIXXXXXXXXXXXXLQKNRIQRIKDEGQDEHNIRKQEEVLQEYLMMVPDCQRRLIKAY 230
C+RI + + +K++G D +++++QE VL E MMVPDC +RL A
Sbjct: 14 CKRIVKELRSYEKEVEKEAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLETAL 73
Query: 231 TDLKTTLEQNRTS 269
DLK TL + + S
Sbjct: 74 ADLKATLAELKES 86
>07_03_0434 +
18175560-18175695,18176068-18176177,18176553-18176616,
18176839-18176915,18177152-18177223,18178337-18178456
Length = 192
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +3
Query: 159 KQEEVLQEYLMMVPDCQRRLIKAYTDL 239
KQ EV L+ V DCQRR I Y+D+
Sbjct: 163 KQFEVFDIELLAVQDCQRRTIAFYSDV 189
>03_05_0642 -
26346260-26346367,26347902-26348162,26348542-26349849,
26349960-26350178,26350241-26350300,26352159-26352215,
26352945-26353029,26353486-26353843,26353931-26355170
Length = 1231
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 450 PPPPPTSTQKSFITTNVHPDTSKHKFRHQQG 542
P PPPT ++ + N+ PD S + HQ G
Sbjct: 838 PVPPPTFSESVYRQLNLFPDHSTNVRLHQSG 868
>04_04_1542 - 34264994-34265331,34266195-34267029
Length = 390
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +3
Query: 441 LNVPPPPPTSTQKSFITTNVHPDTSKHKFRHQQGPTIDGPRRIKIRAPNLLWPP 602
L +PPPPP S K + H H H P P +++ P ++ PP
Sbjct: 224 LPLPPPPPPSPPKPLVAQQQH---HHHGHHHHPPPPQPPPSSLQL-PPAVVAPP 273
>02_05_1276 + 35397948-35398298,35398937-35401738,35402085-35402306,
35402503-35402562,35402615-35402698,35402740-35402816,
35403147-35403363
Length = 1270
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +2
Query: 170 GSSGVPDDGSRLSKEINQSIYRSQNYFRTEQDLKEHEEYITAEQVLKDAE 319
GS+ VP + +KE+NQSI + Y E + ++ +E+ LK+ +
Sbjct: 862 GSNIVPMVVGKETKEVNQSIQQFMVYVGFEHECSYGHRFLLSEKHLKEID 911
>05_01_0199 + 1434040-1434414,1434808-1435127,1435889-1435928
Length = 244
Score = 27.9 bits (59), Expect = 6.9
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = -3
Query: 464 WRWWRDIKERIF 429
WRWWRD +E+++
Sbjct: 233 WRWWRDRREQLY 244
>02_03_0018 - 13978247-13978717
Length = 156
Score = 27.9 bits (59), Expect = 6.9
Identities = 9/29 (31%), Positives = 13/29 (44%)
Frame = -1
Query: 535 WWRNLCLLVSGCTFVVMNDFCVEVGGGGG 449
WW +L G T + + C +GG G
Sbjct: 22 WWEATVILCGGVTEITRQEECARIGGHAG 50
>01_03_0116 - 12665212-12665241,12665555-12666307
Length = 260
Score = 27.9 bits (59), Expect = 6.9
Identities = 29/86 (33%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Frame = -1
Query: 517 LLVSGCTFVVMNDFCVEVGG-GGGTLRNAYLFFKX**LE-L*HDLVLNVNYY*FIKRR*L 344
LL+S TF +E GG GGG LR L L L HD + V + +
Sbjct: 68 LLMSPSTFPYFMLVALEAGGGGGGLLRGLLLLLLYPALRLLGHDRAIRVMA--MVSFAGV 125
Query: 343 *LDGWKLGFSVLENLFSGNVFLVFFE 266
DG++LG S L L +V FE
Sbjct: 126 RKDGFRLGSSTLPRLLLEDVSAEVFE 151
>10_07_0063 -
12502305-12503361,12503567-12503668,12504251-12504378,
12504653-12504764,12504876-12504927,12505260-12505517,
12505943-12506079,12506296-12506606
Length = 718
Score = 27.5 bits (58), Expect = 9.1
Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Frame = +3
Query: 108 NRIQRIKDEGQDEHNIRKQEEVLQEYLMMVPDCQRRLIKAYTDLKTTLEQNRTSKN-TRN 284
NR + K +GQD N + + V ++ + Q+R K L+ N + ++ +
Sbjct: 332 NRNKENKSKGQDNMNKKSSQAVFPQHTVTTNTVQKRAEKIIPSLQHGESGNSSQQHLSSK 391
Query: 285 TLPLNRFSRTLNPSFQPSSHNYLL 356
P + L P HN +L
Sbjct: 392 QTPTEQLLHYLPQFPHPQQHNEVL 415
>01_01_0667 + 5099026-5099188,5099262-5099661,5099748-5100648
Length = 487
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +3
Query: 393 SCHNSSYYXLKNKYAFLNVPPPPPTSTQKS 482
S HNSS + A N PPPPPTS S
Sbjct: 370 STHNSS-----SSAATTNAPPPPPTSNVSS 394
>01_01_0595 - 4430738-4430785,4430904-4432679
Length = 607
Score = 27.5 bits (58), Expect = 9.1
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Frame = +3
Query: 450 PPPPPTSTQKSFITTNVHPDTSKHKFRHQQ--GPTIDGPRRIKIRAPNLLWPPQ*PA 614
PPPPP S + T DT + P+I P R ++ AP PP PA
Sbjct: 110 PPPPPDSGASPSVPTTKRVDTLPPAAADKAAISPSIPVPVRKRVHAPQ---PPPAPA 163
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,066,232
Number of Sequences: 37544
Number of extensions: 329742
Number of successful extensions: 1693
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1662
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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