Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30088
         (622 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087794-9|AAY86292.1|   94|Caenorhabditis elegans Hypothetical ...    30   1.2  
Z50177-3|CAA90545.2|  765|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z68220-2|CAA92485.1|  234|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z98860-2|CAB11545.1|  337|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>AC087794-9|AAY86292.1|   94|Caenorhabditis elegans Hypothetical
           protein Y32G9A.13 protein.
          Length = 94

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +3

Query: 378 TFKTKSCHNSS-YYXLKNKYAFLNVP 452
           T KTK CHNSS +Y ++ K A  +VP
Sbjct: 43  TKKTKKCHNSSAFYIVREKEALPSVP 68


>Z50177-3|CAA90545.2|  765|Caenorhabditis elegans Hypothetical
           protein F46G10.5 protein.
          Length = 765

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -1

Query: 325 LGFSVLENLFSGNVFLVFFEVLFCSKVVLRSVYALI 218
           LGF VL +LF     L FF  LFC   + R V+  I
Sbjct: 190 LGFGVLLSLFVLFGVLFFFSRLFCQFTIFRIVFLWI 225


>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
            F47A4.2 protein.
          Length = 3498

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 19/76 (25%), Positives = 35/76 (46%)
 Frame = +3

Query: 117  QRIKDEGQDEHNIRKQEEVLQEYLMMVPDCQRRLIKAYTDLKTTLEQNRTSKNTRNTLPL 296
            +RI+ E +D+    K+E   QE      + + R  +     +  +EQ R S+        
Sbjct: 2676 ERIQKELEDKVRREKEEAARQEKERQEQEARMREAREAELSRQRMEQQRRSQQNPYMNQQ 2735

Query: 297  NRFSRTLNPSFQPSSH 344
             ++S+   PS+Q SS+
Sbjct: 2736 GQYSQQPPPSYQQSSY 2751


>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
           protein C16A3.7 protein.
          Length = 1119

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 207 QRRLIKAYTDLKTTLEQNRTSKNTRNTLPLNRFSRTLNPSFQPSSHN 347
           QRR ++       +  QN++ +N RN L ++R +   N S Q  S N
Sbjct: 141 QRRQLEIQEQRGDSHPQNQSRQNNRNQLNVDRIANQQNKSVQNPSRN 187


>Z68220-2|CAA92485.1|  234|Caenorhabditis elegans Hypothetical
           protein T20D3.2 protein.
          Length = 234

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 396 CHNSSYYXLKNKYAFLNVPPPPPTST 473
           C  SSYY   N Y  LN P P  ++T
Sbjct: 105 CLGSSYYTCMNLYTLLNKPQPDFSNT 130


>Z98860-2|CAB11545.1|  337|Caenorhabditis elegans Hypothetical
           protein Y26G10.2 protein.
          Length = 337

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/67 (23%), Positives = 31/67 (46%)
 Frame = -1

Query: 385 LNVNYY*FIKRR*L*LDGWKLGFSVLENLFSGNVFLVFFEVLFCSKVVLRSVYALINLL* 206
           L VN+Y F+  +   +DG  + F  +  LF+    +       C  +    + +++N+  
Sbjct: 72  LLVNFYTFVPSKITRIDGLLIDFIDINTLFTSMYVVYSLASSSCLLLFCNRILSILNMYR 131

Query: 205 QSGTIIR 185
           +S T IR
Sbjct: 132 KSKTCIR 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,302,246
Number of Sequences: 27780
Number of extensions: 268187
Number of successful extensions: 1193
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1183
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)