Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30088
         (622 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                26   0.34 
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   2.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.5  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   5.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.5  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   7.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   7.3  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   9.7  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +1

Query: 436 RSLMSLHHRQPQHKSRSSRQMCTQIQAS-TSFAT-SKDLPSTGHGG 567
           +SL  LH+RQP   S S       + AS   FAT     P  G GG
Sbjct: 359 QSLQHLHYRQPPTLSESYSSYVNSMYASGAQFATPCTPSPPRGPGG 404


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 248 FRTEQDLKEHEEYITAEQVLKDAE 319
           FR   D+KE E  + A+ +LK A+
Sbjct: 509 FRVRSDVKESEFRLQADIILKRAD 532


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +3

Query: 450  PPPPPTSTQKSFI 488
            PPPPP S+ ++++
Sbjct: 1357 PPPPPPSSGQAYL 1369


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 328 KLGFSVLENLFSGNVFLVFFEV 263
           KL F  L+N    +  LVF+EV
Sbjct: 31  KLAFGFLDNSVWADGLLVFYEV 52


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 560 WPVDGRSLLVAKLVLACIWVHICRDERLLC 471
           WPV   +++   LVL  + +   R +RL C
Sbjct: 105 WPVKKEAVVEGDLVLGGLMMVHERQDRLTC 134


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -1

Query: 304 NLFSGNVFLVFFEVLFCSKVVLRSVYALIN 215
           N     VF V F + +C+  +   +YAL +
Sbjct: 37  NCIHPTVFSVLFWLGYCNSAINPCIYALFS 66


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -1

Query: 304 NLFSGNVFLVFFEVLFCSKVVLRSVYALIN 215
           N     VF V F + +C+  +   +YAL +
Sbjct: 485 NCIHPTVFSVLFWLGYCNSAINPCIYALFS 514


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -3

Query: 560 WPVDGRSLLVAKLVLACIW 504
           W + G  LLV  L   CIW
Sbjct: 174 WELAGTLLLVWILCYFCIW 192


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,536
Number of Sequences: 438
Number of extensions: 3646
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)