Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30087
(823 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 287 3e-76
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 283 4e-75
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 195 1e-69
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 259 7e-68
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 226 5e-58
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 118 1e-54
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 213 3e-54
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 213 6e-54
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 209 7e-53
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 188 1e-46
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 172 1e-41
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 149 1e-34
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 104 2e-21
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 101 3e-20
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 99 7e-20
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 97 6e-19
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 96 1e-18
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 95 2e-18
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 91 2e-17
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 87 5e-16
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 86 9e-16
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 81 2e-14
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 81 3e-14
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 81 4e-14
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 76 9e-13
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 76 9e-13
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 75 2e-12
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 74 4e-12
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 73 9e-12
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 67 4e-10
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 67 6e-10
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 63 9e-09
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote... 59 1e-07
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 41 0.033
UniRef50_UPI0001555114 Cluster: PREDICTED: hypothetical protein,... 36 0.93
UniRef50_A5C9D1 Cluster: Putative uncharacterized protein; n=1; ... 36 1.6
UniRef50_Q4QE35 Cluster: Putative uncharacterized protein; n=3; ... 35 2.8
UniRef50_Q0RWF5 Cluster: Transposase; n=7; Rhodococcus|Rep: Tran... 34 4.9
UniRef50_Q9QCX4 Cluster: Overlapping protein; n=1; Chayote mosai... 33 6.5
UniRef50_Q9Y4F5 Cluster: Protein KIAA0284; n=22; Eutheria|Rep: P... 33 6.5
UniRef50_UPI0000F2BABA Cluster: PREDICTED: hypothetical protein;... 33 8.6
UniRef50_A6G362 Cluster: Putative uncharacterized protein; n=1; ... 33 8.6
UniRef50_A6RSN5 Cluster: Predicted protein; n=1; Botryotinia fuc... 33 8.6
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 287 bits (703), Expect = 3e-76
Identities = 132/172 (76%), Positives = 146/172 (84%)
Frame = +1
Query: 1 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 180
KHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G EV KIV
Sbjct: 7 KHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVM 66
Query: 181 QRLIKVDGKVRTEPTYPTGFMRCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 360
QRL+KVDGKVRT+PTYP G+M +EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKV
Sbjct: 67 QRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKV 126
Query: 361 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFGLG 516
K+ G K VP+LVTHDGRTIRYPDPLI NDS+Q+DIA+ KI D+IKF G
Sbjct: 127 KKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSG 178
Score = 93.5 bits (222), Expect = 6e-18
Identities = 46/69 (66%), Positives = 51/69 (73%)
Frame = +3
Query: 510 SGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTSPRG*TTCS*IGKGTKGVH 689
SGNLCMITGGRNLGRVGT+V+RERHPGSFDIVHIKDS GH T IGKG K +
Sbjct: 177 SGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNK-PY 235
Query: 690 LRCRAGKGL 716
+ GKG+
Sbjct: 236 ISLPKGKGV 244
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 283 bits (694), Expect = 4e-75
Identities = 129/172 (75%), Positives = 145/172 (84%)
Frame = +1
Query: 1 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 180
KHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI
Sbjct: 7 KHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICM 66
Query: 181 QRLIKVDGKVRTEPTYPTGFMRCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 360
QR IK+DGKVRT+ TYP GFM I+KT E FRLIYD KGRF +HRITPEEAKYKLCKV
Sbjct: 67 QRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKV 126
Query: 361 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFGLG 516
+++ G K +P+LVTHD RTIRYPDPLIKVND+IQ+D+ T KI DFIKF G
Sbjct: 127 RKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTG 178
Score = 79.0 bits (186), Expect = 1e-13
Identities = 36/69 (52%), Positives = 48/69 (69%)
Frame = +3
Query: 510 SGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTSPRG*TTCS*IGKGTKGVH 689
+GNLCM+TGG NLGR+G I +RERHPGSFD+VH+KD+ G++ + IGKG K
Sbjct: 177 TGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNK-PW 235
Query: 690 LRCRAGKGL 716
+ GKG+
Sbjct: 236 ISLPRGKGI 244
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 195 bits (476), Expect(2) = 1e-69
Identities = 91/114 (79%), Positives = 99/114 (86%)
Frame = +1
Query: 1 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 180
KHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI
Sbjct: 7 KHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICM 66
Query: 181 QRLIKVDGKVRTEPTYPTGFMRCCLIEKTNELFRLIYDVKGRFTIHRITPEEAK 342
QR IK+DGKVRT+ TYPTGFM I+KT E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 67 QRFIKIDGKVRTDITYPTGFMDVISIDKTGEHFRLIYDVKGRFTVHRITAEEAK 120
Score = 91.9 bits (218), Expect(2) = 1e-69
Identities = 38/56 (67%), Positives = 48/56 (85%)
Frame = +1
Query: 340 KYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKF 507
+YKLCKVK++ G K +P+LVTHD RTIRYPDPLIKVND++++D+ T KI DFIKF
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLDTGKITDFIKF 207
Score = 78.6 bits (185), Expect = 2e-13
Identities = 33/57 (57%), Positives = 43/57 (75%)
Frame = +3
Query: 510 SGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTSPRG*TTCS*IGKGTK 680
+ N+CM+TGG NLGR+G I +RERHPGSFD+VH+KDSTG++ + IGKG K
Sbjct: 209 TSNMCMVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGNSFATRLSNIFVIGKGNK 265
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 259 bits (634), Expect = 7e-68
Identities = 118/175 (67%), Positives = 140/175 (80%)
Frame = +1
Query: 1 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 180
KHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+ I+
Sbjct: 7 KHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILM 66
Query: 181 QRLIKVDGKVRTEPTYPTGFMRCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 360
QR I+VDGKVRT+ TYP GFM I KTNE FRL+YD KGRF +H I EEAK+KLCKV
Sbjct: 67 QRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKV 126
Query: 361 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFGLGTCV 525
+ + G K +PYL T+DGRTIRYPDPLIK ND+I+LD+ KI++FIKF +G V
Sbjct: 127 RSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVV 181
Score = 69.3 bits (162), Expect = 1e-10
Identities = 32/56 (57%), Positives = 39/56 (69%)
Frame = +3
Query: 513 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTSPRG*TTCS*IGKGTK 680
GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH IGKGTK
Sbjct: 178 GNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTK 233
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 226 bits (553), Expect = 5e-58
Identities = 99/171 (57%), Positives = 129/171 (75%)
Frame = +1
Query: 4 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 183
HLKRLNAP WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G EV IVK
Sbjct: 8 HLKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGREVTMIVKN 67
Query: 184 RLIKVDGKVRTEPTYPTGFMRCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 363
R IK+DGK+RT+ YP GFM I +T E FRL+Y+ K RF + +T E+AK+KLCK++
Sbjct: 68 RTIKIDGKIRTDTRYPVGFMDVLSIPRTKENFRLMYNTKRRFCLVPLTAEQAKFKLCKIE 127
Query: 364 RVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFGLG 516
+ G +PY+VTHDGRTIRYP P ++ ND+I+L++ T KI+DF+KF +G
Sbjct: 128 KRVLGTGAIPYIVTHDGRTIRYPHPELQANDTIKLNLETGKIVDFVKFDIG 178
Score = 65.3 bits (152), Expect = 2e-09
Identities = 31/56 (55%), Positives = 37/56 (66%)
Frame = +3
Query: 513 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTSPRG*TTCS*IGKGTK 680
GN M+ GG +GRVG IV RE HPGSF+IVHIKD+ G+T IGKGT+
Sbjct: 178 GNTAMMIGGNGMGRVGVIVKREVHPGSFEIVHIKDAKGNTFTTRLNNVFVIGKGTE 233
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 118 bits (285), Expect(2) = 1e-54
Identities = 54/69 (78%), Positives = 59/69 (85%)
Frame = +1
Query: 1 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 180
KHLK + APK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI
Sbjct: 7 KHLKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKIRM 66
Query: 181 QRLIKVDGK 207
Q IK+DGK
Sbjct: 67 QHFIKMDGK 75
Score = 118 bits (284), Expect(2) = 1e-54
Identities = 51/75 (68%), Positives = 61/75 (81%)
Frame = +1
Query: 292 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLD 471
D KGRF +HRITPEEAKYKL KV+++ G K +P+LVTHD RTIRYPDPLIK+ND+IQ+D
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQID 135
Query: 472 IATTKIMDFIKFGLG 516
+ T KI DF KF G
Sbjct: 136 LETGKITDFFKFDTG 150
Score = 74.5 bits (175), Expect = 3e-12
Identities = 31/55 (56%), Positives = 41/55 (74%)
Frame = +3
Query: 510 SGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTSPRG*TTCS*IGKG 674
+GNLCM+TGG NLGR+G I +RE HPGSFD+VH+KD+ G++ + IGKG
Sbjct: 149 TGNLCMVTGGTNLGRIGVITNRENHPGSFDVVHVKDANGNSFATRLSNIFVIGKG 203
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 213 bits (521), Expect = 3e-54
Identities = 98/176 (55%), Positives = 130/176 (73%), Gaps = 1/176 (0%)
Frame = +1
Query: 1 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 180
KH KRLNAPK W+L+KLGG++APR S+GPHK + +PLVI +RN+LKY+ E L I+K
Sbjct: 7 KHYKRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRESLNILK 66
Query: 181 QRLIKVDGKVRTEPTYPTGFMRCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 360
+ I VDGKVR + +P G M I+ T E +R++YD G F +HRIT +E+ +KLCKV
Sbjct: 67 KNEIYVDGKVRADKNFPAGVMDVISIKTTKENYRVLYDNVGHFFLHRITIKESMFKLCKV 126
Query: 361 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFGLGT-CV 525
RV+ G K +PY+VTHDGRTIR+P+ LIK NDSI LD+ K++DFIKF +G+ CV
Sbjct: 127 IRVSIGSKGIPYIVTHDGRTIRFPNLLIKSNDSIVLDLLNNKVIDFIKFSIGSLCV 182
Score = 40.7 bits (91), Expect = 0.043
Identities = 21/56 (37%), Positives = 30/56 (53%)
Frame = +3
Query: 513 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTSPRG*TTCS*IGKGTK 680
G+LC++ G N+GR+G ++ GS IV +KD G + IGKGTK
Sbjct: 178 GSLCVVIKGSNIGRIGVFINTIGGQGSDSIVCLKDFNGSSFSTQTKNLFVIGKGTK 233
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 213 bits (519), Expect = 6e-54
Identities = 97/171 (56%), Positives = 125/171 (73%)
Frame = +1
Query: 4 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 183
HLKRL AP W+L K G +A PSTGPHKLRECLP+ IFLR+RLKYALT E + IVK+
Sbjct: 22 HLKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDRLKYALTAKEAVAIVKR 81
Query: 184 RLIKVDGKVRTEPTYPTGFMRCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 363
RL+KVDGKVRT YPTG M + K+NELFR+IYD KGRF +H I +EA +KL +V
Sbjct: 82 RLVKVDGKVRTNYRYPTGLMDVIELGKSNELFRIIYDCKGRFCVHHIEAKEASFKLLRVN 141
Query: 364 RVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFGLG 516
+ G K +P++VTHDGRTI Y DP ++V+D+++ +I T ++ IKF +G
Sbjct: 142 QFKIGAKGIPHVVTHDGRTISYVDPSVRVHDALKFNIKTGEVESVIKFKVG 192
Score = 50.4 bits (115), Expect = 5e-05
Identities = 21/38 (55%), Positives = 29/38 (76%)
Frame = +3
Query: 513 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTG 626
G++ M+T G N+GRVGTI E+ SFDIVH+KD++G
Sbjct: 192 GDVAMVTAGGNVGRVGTIQKIEKQMASFDIVHLKDTSG 229
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 209 bits (510), Expect = 7e-53
Identities = 105/184 (57%), Positives = 127/184 (69%)
Frame = +1
Query: 1 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 180
+HLKR+ A + WMLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYALTG+EV KI
Sbjct: 18 QHLKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLPH-IFLRNRLKYALTGDEVKKICM 76
Query: 181 QRLIKVDGKVRTEPTYPTGFMRCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 360
Q IKVDGK+RT+ P M I+K E F LIY + RF +HRITPEE KYKLCK+
Sbjct: 77 QWFIKVDGKIRTDNNLPYWIMDVISIDKMGEDFCLIYGINRRFALHRITPEEVKYKLCKM 136
Query: 361 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFGLGTCV*SREA 540
+++ K +P+LV HD T+R+PD LIKVND+IQ+D+ T KI +KF G
Sbjct: 137 RKIFVRAKGIPHLVIHDIHTVRHPDSLIKVNDTIQIDLETGKI-TALKFDTGNLCLVTGG 195
Query: 541 VTWG 552
WG
Sbjct: 196 GNWG 199
Score = 60.9 bits (141), Expect = 4e-08
Identities = 23/41 (56%), Positives = 32/41 (78%)
Frame = +3
Query: 510 SGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHT 632
+GNLC++TGG N GR+G I +RERHP SFD H+KD+ ++
Sbjct: 186 TGNLCLVTGGGNWGRIGVITNRERHPVSFDTFHVKDANSNS 226
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 188 bits (458), Expect = 1e-46
Identities = 92/175 (52%), Positives = 112/175 (64%)
Frame = +1
Query: 1 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 180
KHLKRL APK WML KL GV+APRP GPHKLRECLPL++ +RNRLKYAL E I++
Sbjct: 4 KHLKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNAREGEMILR 63
Query: 181 QRLIKVDGKVRTEPTYPTGFMRCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 360
Q L+ VD R + YP GFM I KT + FRL+YDVKGRF + ++ EA+ KL KV
Sbjct: 64 QGLVHVDNHPRRDGKYPAGFMDVVEIPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMKV 123
Query: 361 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFGLGTCV 525
+ T VP VTHDG IRYPDP + D+I ++ K +D IK G V
Sbjct: 124 VNLYTATGRVPVAVTHDGHRIRYPDPHTSIGDTIVYNVKEKKCVDLIKNRQGKAV 178
Score = 50.8 bits (116), Expect = 4e-05
Identities = 20/38 (52%), Positives = 28/38 (73%)
Frame = +3
Query: 513 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTG 626
G ++TGG N GR+G IV E HPG+F+I H+KD++G
Sbjct: 175 GKAVIVTGGANRGRIGEIVKVECHPGAFNIAHLKDASG 212
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 172 bits (418), Expect = 1e-41
Identities = 93/197 (47%), Positives = 122/197 (61%), Gaps = 31/197 (15%)
Frame = +1
Query: 1 KHLKRLNAPKAWMLD-------------------------KLGGVY----APRPSTGPHK 93
KHLKR+NAPK+WML+ KL +Y A RPS GPHK
Sbjct: 88 KHLKRINAPKSWMLNKLGGIWVITFFAFRLRKNDFITTIPKLKFIYFKKQATRPSQGPHK 147
Query: 94 LRECLPLVIFLRNRLKYALTGNEVLKIV--KQRLIKVDGKVRTEPTYPTGFMRCCLIEKT 267
LRE LPL + L+ RL YAL G +V I+ K++ + VDGKVR + YPTG M IEKT
Sbjct: 148 LRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTGLMDVVRIEKT 207
Query: 268 NELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIK 447
++ FR++YD KGRF + ++ EEAKYKL KV A GP +PY+VTHD RTIR+P+P IK
Sbjct: 208 DQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFPNPEIK 267
Query: 448 VNDSIQLDIATTKIMDF 498
+ D+++ D+ KI +F
Sbjct: 268 IGDTLKYDLVNNKIENF 284
Score = 54.8 bits (126), Expect = 2e-06
Identities = 23/40 (57%), Positives = 29/40 (72%)
Frame = +3
Query: 510 SGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGH 629
SGN+C I G N+GRVG I E+H GSFDI H+KD+ G+
Sbjct: 289 SGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKDAKGN 328
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 149 bits (360), Expect = 1e-34
Identities = 71/166 (42%), Positives = 108/166 (65%)
Frame = +1
Query: 4 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 183
HLKR APK+WMLDK GG +A P++GPHK EC+PL + L+YA E+ I+ +
Sbjct: 8 HLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSIILAE 67
Query: 184 RLIKVDGKVRTEPTYPTGFMRCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 363
+ IKV+G+VRT +P G IEKT E FR++Y+V +F +HRI+ EEA Y+L KV
Sbjct: 68 KNIKVNGRVRTNSHFPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKVT 127
Query: 364 RVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFI 501
+ + +PY+V+ G +IR+ DP I + +I++ T+K++++I
Sbjct: 128 KKYEN-QGIPYIVSSCGLSIRFCDPAIDLGYTIKISNETSKVIEYI 172
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 104 bits (250), Expect = 2e-21
Identities = 65/190 (34%), Positives = 99/190 (52%), Gaps = 15/190 (7%)
Frame = +1
Query: 1 KHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 177
+H+KRL AP AW + K GG +APRP GPH + +PL+I +R+ L YA E KI+
Sbjct: 10 RHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREARKII 69
Query: 178 KQRLIKVDGKVRTEPTYPTGFMRCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 357
+ I VDG VR EP +P G M I +T + +R++ + R + I+ EEA+ K+C+
Sbjct: 70 TRGEIYVDGVVRKEPKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCR 129
Query: 358 VKRVATGPKNVPYLVTHDGRT--IRYPDP------LIKVNDSIQLDI------ATTKIMD 495
+K + HDG+ + DP + V DS+ L++ + K++D
Sbjct: 130 IKNKTYVRGGNLQITMHDGKNWLVEIEDPTDPKEDVYSVGDSLVLELPEPDSGESWKVVD 189
Query: 496 FIKFGLGTCV 525
I F G V
Sbjct: 190 HIPFEEGVWV 199
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 101 bits (241), Expect = 3e-20
Identities = 56/175 (32%), Positives = 86/175 (49%)
Frame = +1
Query: 1 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 180
KHLK APK W + + +PS G H + L L + +R+ LK A E +I+
Sbjct: 8 KHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKRIIN 67
Query: 181 QRLIKVDGKVRTEPTYPTGFMRCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 360
+ VDG+V + +P GFM I KT E++R++ D KGR +++I EE KLCK+
Sbjct: 68 SGNVLVDGRVIKDYKFPVGFMDIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKI 125
Query: 361 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFGLGTCV 525
+T + HDG+ + + V D I L + +I + + G CV
Sbjct: 126 VNKSTIKGGKIQVNLHDGKNVIIDENDYNVGDVIDLKVPDHEINEVFELKEGACV 180
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 99 bits (238), Expect = 7e-20
Identities = 64/175 (36%), Positives = 87/175 (49%), Gaps = 4/175 (2%)
Frame = +1
Query: 4 HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 180
HL+R AP W + K GGV+ RPS GPH L LPL + +R+ LKYA T +E I+
Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIIS 62
Query: 181 QRLIKVDGKVRTEPTYPTGFMRCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 360
+ +KVDG VR + +P G M I T E++R++ D + + I+ EEA KL +V
Sbjct: 63 RGYVKVDGVVRRDYKFPVGLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRV 122
Query: 361 KRVATGPKNVPYLVTHDGR---TIRYPDPLIKVNDSIQLDIATTKIMDFIKFGLG 516
+ L HDGR T IK DS+ D+ I I LG
Sbjct: 123 EGKTMVKGGRIQLHFHDGRNLITTLEAGKQIKTFDSVLYDLRNKAIKAHIPLKLG 177
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 96.7 bits (230), Expect = 6e-19
Identities = 61/182 (33%), Positives = 92/182 (50%), Gaps = 10/182 (5%)
Frame = +1
Query: 1 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 180
KHLKRL AP W L + + RPS GPH + + LPL++ +R+ LKYA E KI++
Sbjct: 8 KHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQ 67
Query: 181 QRLIKVDGKVRTEPTYPTGFMRCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 360
I +DG R E +P G M I + +E + +++D GR ++ + ++ KLCK+
Sbjct: 68 TGKILIDGLKRKEYKHPAGLMDVLSIPEMDETYLVLFDESGRISLKK--TDKTDVKLCKI 125
Query: 361 --KRVATGPKNVPYLVTHDGR--------TIRYPDPLIKVNDSIQLDIATTKIMDFIKFG 510
K V G N+ L HDGR + + + K DS+ + I I + FG
Sbjct: 126 VNKTVVKG-GNI-QLNLHDGRNQIVKVSDAAKAEEDVYKTGDSVLISIPEQSIAGHVAFG 183
Query: 511 LG 516
G
Sbjct: 184 EG 185
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 95.9 bits (228), Expect = 1e-18
Identities = 57/181 (31%), Positives = 89/181 (49%), Gaps = 8/181 (4%)
Frame = +1
Query: 1 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 180
+HL+R AP W + + V+ +PS GPH L +P+ I LR+ YA T E +I+
Sbjct: 10 RHLRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKTMKEARRILA 69
Query: 181 QRLIKVDGKVRTEPTYPTGFMRCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 360
R+I+VDG+V T+ +P G M I + +R++ D + I PEEA YKL ++
Sbjct: 70 SRVIEVDGRVVTDYKFPVGLMDVLHIIPEEKYYRVVPDPARKLRFVEIKPEEAGYKLAQI 129
Query: 361 KRVATGPKNVPYLVTHDGRTI-------RYPDPL-IKVNDSIQLDIATTKIMDFIKFGLG 516
+R T HDGR + Y + K D++ + I I+ + F +G
Sbjct: 130 RRKMTVKNGDLQFTLHDGRNVLIRKGSEAYSTAISYKTYDALLITIPRQSIVSHVPFEVG 189
Query: 517 T 519
T
Sbjct: 190 T 190
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 95.1 bits (226), Expect = 2e-18
Identities = 61/181 (33%), Positives = 91/181 (50%), Gaps = 9/181 (4%)
Frame = +1
Query: 1 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 180
+ LK L AP+ W + + +A +P GPH + LPL++ +RN L YA T E K++
Sbjct: 8 RRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARKLIS 67
Query: 181 QRLIKVDGKVRTEPTYPTGFMRCCLIEKTNELFRLI-YDVKGRFTIHRITPEEAKYKLCK 357
+ +VDG VR + +P GFM + T E FR++ Y VK F +H I EE K +
Sbjct: 68 EGHFRVDGVVRKDYKFPVGFMDVIEVVDTGEKFRMLPYPVK-FFKLHPIPEEEGDLKPVR 126
Query: 358 VKRVATGPKNVPYLVTHDGRTI--RYPDP------LIKVNDSIQLDIATTKIMDFIKFGL 513
++ T L HDGR I R DP + + D++ + + +I IKFG
Sbjct: 127 IENKTTVKGGHVQLNLHDGRNILVRVKDPRNPVEDVYRTMDTLLITVPGQEIKGHIKFGE 186
Query: 514 G 516
G
Sbjct: 187 G 187
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 91.5 bits (217), Expect = 2e-17
Identities = 48/140 (34%), Positives = 71/140 (50%)
Frame = +1
Query: 4 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 183
HL+R +P+ W +++ G ++ +PS GPH +PL + LR+ YA T E I+ +
Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGK 62
Query: 184 RLIKVDGKVRTEPTYPTGFMRCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 363
+KVDGKVR + YP G M + NE +R+I D RI EA K+C+++
Sbjct: 63 GYVKVDGKVRRDYKYPVGLMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIE 122
Query: 364 RVATGPKNVPYLVTHDGRTI 423
L HDGR I
Sbjct: 123 DKTMVKAGKIQLNLHDGRNI 142
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 87.0 bits (206), Expect = 5e-16
Identities = 52/174 (29%), Positives = 83/174 (47%)
Frame = +1
Query: 4 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 183
HLKR+ AP+ W + + + +P G H +PLV+ LR+ LK A +E+ KI+ +
Sbjct: 5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHE 64
Query: 184 RLIKVDGKVRTEPTYPTGFMRCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 363
+ VDGKVR + Y G I N +R++ + G+F H + +A K+CK+
Sbjct: 65 GKVLVDGKVRKDYRYTVGMFDTISIPAINANYRVVIGMDGKF--HLVPVTDASAKICKIV 122
Query: 364 RVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFGLGTCV 525
L HDG T+ + K DS+ L + KI + +G+ V
Sbjct: 123 NKTALRGGKIQLNLHDGTTMIASND-YKTKDSVILKMPERKIDQHFTYAVGSLV 175
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 86.2 bits (204), Expect = 9e-16
Identities = 54/169 (31%), Positives = 81/169 (47%)
Frame = +1
Query: 10 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 189
KRL + + + + P P+ G H + + L+ +R+ LK + E +I+ L
Sbjct: 6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGL 65
Query: 190 IKVDGKVRTEPTYPTGFMRCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 369
+KVDGK E + GFM +IE E +R++Y+ +G + + T E A KL KV+
Sbjct: 66 VKVDGKTVREKKFAVGFMD--VIEINGESYRVVYNDQGALVLMKETKERASMKLLKVRSK 123
Query: 370 ATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFGLG 516
P N L THDGRT D KV D + + KI + IK G
Sbjct: 124 VIAPGNRIQLGTHDGRTFITDDKSKKVGDVWAVSVPDMKISEIIKMQPG 172
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 81.4 bits (192), Expect = 2e-14
Identities = 48/171 (28%), Positives = 79/171 (46%)
Frame = +1
Query: 4 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 183
H KRL+ PK+W + + G + GPH LPL + +R+ LK E +I+ +
Sbjct: 3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSE 62
Query: 184 RLIKVDGKVRTEPTYPTGFMRCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 363
+ VDG R + +P G + NE +R++ D KGR ++++ E KLC++
Sbjct: 63 GKVLVDGISRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLVLYKLN-ETNVNKLCRIN 121
Query: 364 RVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFGLG 516
T L +DG I + DS+ L I ++ +KF +G
Sbjct: 122 NKTTVKGGKIQLNLNDGTNILGSND-YGTKDSLILSIPDKHVVKHLKFEVG 171
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 81.0 bits (191), Expect = 3e-14
Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 1/172 (0%)
Frame = +1
Query: 4 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 183
H+KRL P++W L + ++ +P+ G H C+PL + LR+ L A E +++
Sbjct: 5 HMKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLAHNLREAKRMLAT 64
Query: 184 RLIKVDGKVRTEPTYPTGFMRCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 363
R + VDG++ T+ G M + + + FR I DV G+ I+ + A KLC+V
Sbjct: 65 RQVLVDGRIETDLGRGVGLMDVLTVGE--DSFRCILDVNGKLRYRSISDKAAASKLCRVM 122
Query: 364 RVATGPKNVPYLVTHDGRTIRYPD-PLIKVNDSIQLDIATTKIMDFIKFGLG 516
+T + HDGR I D L D++ + + + F G
Sbjct: 123 GKSTITDGKTQIHLHDGRNILVSDAKLYDSGDTLVISLPDQSVAGHHPFSKG 174
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 80.6 bits (190), Expect = 4e-14
Identities = 49/169 (28%), Positives = 84/169 (49%), Gaps = 2/169 (1%)
Frame = +1
Query: 1 KHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 177
+HL+ L P+ W + K G + +PS GPH +P+ ++LR+ L A EV ++
Sbjct: 7 RHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYLL 66
Query: 178 KQRLIKVDGKVRTEPTYPTGFMRCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 357
+ VDG+ + +P G I + NE +R++ D +G+ + +I EEA K K
Sbjct: 67 NNGKVLVDGRPIKDYKFPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYGK 126
Query: 358 -VKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFI 501
+++V+ + Y +T DGRT D K + + +I KI + I
Sbjct: 127 IIRKVSVRGGKIQYTLT-DGRTF-LGDNSYKTHYGVVYEIPNFKIREVI 173
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 76.2 bits (179), Expect = 9e-13
Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 1/179 (0%)
Frame = +1
Query: 1 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 180
KH KR+++ K G++ + S+GPH + + L+ ++ A E K+VK
Sbjct: 7 KHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEAQKVVK 66
Query: 181 QRLIKVDGKVRTEPTYPTGFMRCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 360
+ V+GK +P M N+ +R++ G+ T++ I E K+CKV
Sbjct: 67 TGFLYVNGKKCLSHKFPISLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKV 126
Query: 361 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFGLGT-CV*SR 534
++ ++T D R ++ IKV DS+ + +I+ +KF +G+ C+ +R
Sbjct: 127 IKIINASSKNKIIITDDLRELKINYAKIKVEDSLLIKTINDEIVYALKFEVGSLCLITR 185
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 76.2 bits (179), Expect = 9e-13
Identities = 48/140 (34%), Positives = 65/140 (46%)
Frame = +1
Query: 4 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 183
H+ R AP + K + R GPHK++E +PL I L+ LK T E +I+
Sbjct: 3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFD 62
Query: 184 RLIKVDGKVRTEPTYPTGFMRCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 363
+ VDGKVR + YP G M I + R+I D T I+ E+AKYK ++
Sbjct: 63 GKVLVDGKVRRDYKYPVGLMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIM 122
Query: 364 RVATGPKNVPYLVTHDGRTI 423
T V L DGR I
Sbjct: 123 NKTTLKSGVLQLNLEDGRNI 142
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 74.9 bits (176), Expect = 2e-12
Identities = 44/171 (25%), Positives = 79/171 (46%)
Frame = +1
Query: 4 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 183
H KR++ PK+W + K + GPH + +PL + LR+ L E +++ +
Sbjct: 4 HQKRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDMLGVVDNRAEAKRVLSE 63
Query: 184 RLIKVDGKVRTEPTYPTGFMRCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 363
+ VDG R + +P G M I N +R++ D K R ++++ A KLC+++
Sbjct: 64 GNVLVDGVARKDLRFPVGLMDIITIPLNNVEYRVMLDGKSRLVLNKLDGTGAD-KLCRIE 122
Query: 364 RVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFGLG 516
+ + + +DG I DSI L + K++ IK+ +G
Sbjct: 123 GKTSIKEGKIQMRLNDGVNI-IGSNNYNTKDSIILSVPDKKVVKHIKYEVG 172
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 74.1 bits (174), Expect = 4e-12
Identities = 45/170 (26%), Positives = 81/170 (47%), Gaps = 1/170 (0%)
Frame = +1
Query: 10 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 189
K + A + + + ++ P+ H + +P++I LR+ LK E+ +I+ +
Sbjct: 7 KIMMASRKLKIPRKTNFWSVTPTPATHSKEDSIPMLIALRDYLKLGDKEREITRILNNNM 66
Query: 190 IKVDGKVRTEPTYPTGFMRCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKR 366
+KVDG++ + +P GFM I+ + ++YD KG+ I + P KL K VK+
Sbjct: 67 VKVDGRIVKDRRFPVGFMDVLSIDTLENDYIIVYDRKGKLVIRQNAPGNKGLKLFKVVKK 126
Query: 367 VATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFGLG 516
G + L HDG+TI I +D + + I +I + +K G
Sbjct: 127 TIIGTGKI-QLGFHDGKTIVTDRKDINTSDVLLMKIPDLEIENVLKIAEG 175
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 72.9 bits (171), Expect = 9e-12
Identities = 48/160 (30%), Positives = 74/160 (46%)
Frame = +1
Query: 1 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 180
K+LKRL AP +W + K + + + GPH LP+ ++LR + A +EV KI+
Sbjct: 3 KYLKRLVAPGSWHIPKKVQKFVMKTAPGPHNAG-ALPVGVWLREHIGLAQNASEVKKILH 61
Query: 181 QRLIKVDGKVRTEPTYPTGFMRCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 360
QR + V+G+ + G I K + +R+ DVKG I E AK +LCK+
Sbjct: 62 QRDVLVNGRACKDSRMGLGVFDIVSIPKLGKHYRIQLDVKGNLVAIEIPAESAKTRLCKI 121
Query: 361 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIAT 480
+ T L G + D K DS+ + + T
Sbjct: 122 RNKTTVKGGKVQLNFAFGANV-LADNTYKAKDSVVVTLGT 160
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 67.3 bits (157), Expect = 4e-10
Identities = 37/122 (30%), Positives = 62/122 (50%)
Frame = +1
Query: 10 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 189
KR+ AP AW + + Y S+GPH LP+ I+LR+ +++AL EV KI+ R
Sbjct: 5 KRMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKILHDRQ 63
Query: 190 IKVDGKVRTEPTYPTGFMRCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 369
+ ++G + T+ K ++ + ++ D KGR + I+ + AK +L KV
Sbjct: 64 VLLNGHIVTDEHIGIDVFDIISFPKIDKHYMILVDEKGRHNEYEISADAAKLQLVKVANK 123
Query: 370 AT 375
T
Sbjct: 124 TT 125
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 66.9 bits (156), Expect = 6e-10
Identities = 52/172 (30%), Positives = 76/172 (44%)
Frame = +1
Query: 10 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 189
K + AP+ + + +A G HK +PL+I LR+ LK E+ +I+ L
Sbjct: 6 KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSL 65
Query: 190 IKVDGKVRTEPTYPTGFMRCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 369
+ VDGKV E GFM + + L + YD KG+ I E KL +VK
Sbjct: 66 VMVDGKVVKERRRGIGFMDTLTVSGNDYL--VSYDRKGKLVILPKPGETKGLKLLRVKGK 123
Query: 370 ATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFGLGTCV 525
+ HDG T+ IK DS+ + I +I+D +KF G V
Sbjct: 124 TYVKGGRIQISFHDGSTMVTDRKDIKNGDSVLVKIPKKEIVDVLKFAPGNRV 175
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 62.9 bits (146), Expect = 9e-09
Identities = 44/175 (25%), Positives = 74/175 (42%), Gaps = 1/175 (0%)
Frame = +1
Query: 4 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 183
H KRL+ P +W +++ + + GPH +PL+I LR+ L YA E + +
Sbjct: 4 HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNE 62
Query: 184 RLIKVDGKVRTEPTYPTGFMRCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 363
+ ++GK ++ P G + E +R+ GR + I P+ A+ KL K+
Sbjct: 63 DNVLINGKAISDEERPVGMFDILAFTEREEYYRVFPGEGGRLALTAIDPDAAQSKLGKIV 122
Query: 364 RVATGPKNVPYLVTHDGRT-IRYPDPLIKVNDSIQLDIATTKIMDFIKFGLGTCV 525
L HDG T I D DSI + +++ ++ G V
Sbjct: 123 TKTHVSGGDVQLGLHDGETLIVEDDQTYDAGDSIVVGNEDGEVVAHFEYEEGALV 177
>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
symbiosum
Length = 238
Score = 59.3 bits (137), Expect = 1e-07
Identities = 42/172 (24%), Positives = 70/172 (40%)
Frame = +1
Query: 1 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 180
K LKR AP W + + G + G H +P + LR+ L T E K +
Sbjct: 8 KKLKRQMAPSFWGITRKGKRFVVTVHPGAHSKHRSIPSAVLLRDTLGAVSTLREAKKSIY 67
Query: 181 QRLIKVDGKVRTEPTYPTGFMRCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 360
++VDG RT + G M + T +++R++ +I E K+C+V
Sbjct: 68 SGNVEVDGVKRTSLHHGIGLMDVVELGGTGDIYRMVPSGGAILKPVKIEAAEKDRKICRV 127
Query: 361 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFGLG 516
+ + HDGR++ D + V DS + + KI+ + G
Sbjct: 128 TSKTSISGGRTQIGFHDGRSL-ISDEKVSVGDSCLVQVPGQKILKVARMEKG 178
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 41.1 bits (92), Expect = 0.033
Identities = 27/88 (30%), Positives = 45/88 (51%)
Frame = -2
Query: 519 SSQTKLDEVHNLRSCDV*LDGIVDFDKWVWVADGAAIMRYQVRNILRSGRHTLDFTQLVL 340
S+ +LD + +L DV +G+ D + V +GAA+++ R+ L QLVL
Sbjct: 102 SADVELDRIGDLVRRDVDHNGVTLLDHGIRVTNGAAVVQTDARHALVPELLAPHLAQLVL 161
Query: 339 SLLRGDTVDCESALNIID*TKQFISLLN 256
D V ES+L ++D + FI+L +
Sbjct: 162 RFDSLDAVHNESSLGVVDEPEVFIALFD 189
>UniRef50_UPI0001555114 Cluster: PREDICTED: hypothetical protein,
partial; n=1; Ornithorhynchus anatinus|Rep: PREDICTED:
hypothetical protein, partial - Ornithorhynchus anatinus
Length = 302
Score = 36.3 bits (80), Expect = 0.93
Identities = 24/75 (32%), Positives = 33/75 (44%)
Frame = -1
Query: 763 RECALSPLPSANGEGGSPLPARQRRCTPFVPLPIYEHVVQPRGEVCPVESLMCTMSKEPG 584
R CA +P + PLPAR R C PF P P V R CP ++ P
Sbjct: 79 RACARAPFQTTPSR---PLPARLRTCPPFRPRPGARSPVPARLRTCP--PFDHALAPAPS 133
Query: 583 CLSRDTMVPTRPKLR 539
++ ++P RP+ R
Sbjct: 134 PMAPAHVLPFRPRPR 148
>UniRef50_A5C9D1 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 702
Score = 35.5 bits (78), Expect = 1.6
Identities = 18/46 (39%), Positives = 30/46 (65%)
Frame = +1
Query: 82 GPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTE 219
G + +C+P+ FL NRL Y TG +V++ V ++ IK + +V+TE
Sbjct: 2 GKYTXVQCIPVEEFL-NRLNYFSTGLKVMQSVMEKTIKQEFEVKTE 46
>UniRef50_Q4QE35 Cluster: Putative uncharacterized protein; n=3;
Trypanosomatidae|Rep: Putative uncharacterized protein -
Leishmania major
Length = 723
Score = 34.7 bits (76), Expect = 2.8
Identities = 19/61 (31%), Positives = 25/61 (40%)
Frame = +2
Query: 554 CGHHRVPRETSRLLRHCAHQGLHGTHFATRLNNVFINRQGHEGRTSSLPRGQRASAFTIR 733
CGH+ VP+ S +HC + HG+ F HE P G A T+R
Sbjct: 360 CGHNFVPKPLSNSCQHCGERIPHGSRFCGTCGQPVQGASAHE----LTPGGPNKHASTVR 415
Query: 734 R 736
R
Sbjct: 416 R 416
>UniRef50_Q0RWF5 Cluster: Transposase; n=7; Rhodococcus|Rep:
Transposase - Rhodococcus sp. (strain RHA1)
Length = 384
Score = 33.9 bits (74), Expect = 4.9
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = +3
Query: 468 RHRNYEDYGLHQVWSGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKD 617
R ++ +D + W G+L I G RNL +GT+V ER G+ +VH+ D
Sbjct: 223 RPKDVKDRAVPGHWEGDL--IVGKRNLSAIGTLV--ERSTGTVMLVHLPD 268
>UniRef50_Q9QCX4 Cluster: Overlapping protein; n=1; Chayote mosaic
virus|Rep: Overlapping protein - Chayote mosaic virus
Length = 680
Score = 33.5 bits (73), Expect = 6.5
Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Frame = -1
Query: 748 SPLPSANGEGGSPLPARQRRCTP-FVPLPIYEH-------VVQPRGEV--CPVESLMCTM 599
SP+P+ NG+G PLP +R C P P P + H QP +V P S+ TM
Sbjct: 469 SPVPAPNGKGLLPLPLPRRPCKPSSTPRPHHPHRKSHSHLPNQPASKVPSFPHPSIP-TM 527
Query: 598 SKEPGCLSRDTMVPTRPKLRPP 533
S+ P S + P LR P
Sbjct: 528 SQPPSLPSSSSGPPRHLPLRSP 549
>UniRef50_Q9Y4F5 Cluster: Protein KIAA0284; n=22; Eutheria|Rep:
Protein KIAA0284 - Homo sapiens (Human)
Length = 1589
Score = 33.5 bits (73), Expect = 6.5
Identities = 27/81 (33%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Frame = -1
Query: 739 PSANGEG-GSPLPARQRRCTPFVPLPIYEHVVQPRGEV----CPVESLMCTMSKEPGCLS 575
PS GE GS LP QR+ P+ P + VQ GE+ P E C+ +EP
Sbjct: 170 PSWWGEDDGSTLPDAQRQGEPYPERP--KGPVQQDGELHGFRAPAEPQGCSFRREPSYFE 227
Query: 574 RDTMVPTRPKLRPPVIIHKFP 512
T +P P V H+ P
Sbjct: 228 IPTKETPQPSQPPEVPAHEMP 248
>UniRef50_UPI0000F2BABA Cluster: PREDICTED: hypothetical protein;
n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
protein - Monodelphis domestica
Length = 397
Score = 33.1 bits (72), Expect = 8.6
Identities = 24/71 (33%), Positives = 31/71 (43%)
Frame = -1
Query: 790 PLMRGRTFGRECALSPLPSANGEGGSPLPARQRRCTPFVPLPIYEHVVQPRGEVCPVESL 611
P +RG R P PS++GE P P + R TP +PLP +VCP S
Sbjct: 130 PRIRGWRALRSDEAHP-PSSDGETELPDPPQPLRATPAIPLPEASMRAFLHVQVCPGRSP 188
Query: 610 MCTMSKEPGCL 578
+ P CL
Sbjct: 189 PDGAAVAPQCL 199
>UniRef50_A6G362 Cluster: Putative uncharacterized protein; n=1;
Plesiocystis pacifica SIR-1|Rep: Putative
uncharacterized protein - Plesiocystis pacifica SIR-1
Length = 206
Score = 33.1 bits (72), Expect = 8.6
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +3
Query: 666 GKGTKGVHLRCRAGKGLPPSPFAEGSGDKAHSRP 767
GKG KG H + + GKG P +G G A RP
Sbjct: 138 GKGGKGKHGKAKPGKGKPGKGKGKGKGHHADDRP 171
>UniRef50_A6RSN5 Cluster: Predicted protein; n=1; Botryotinia
fuckeliana B05.10|Rep: Predicted protein - Botryotinia
fuckeliana B05.10
Length = 1091
Score = 33.1 bits (72), Expect = 8.6
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 414 PHH-PLPRPTYQSQRFHPVRHRNYEDYGLHQVWSG 515
PH P+ P +S+RF P HRNY D ++ ++G
Sbjct: 631 PHQSPILSPRSRSERFPPDEHRNYLDASINNAYNG 665
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 936,554,993
Number of Sequences: 1657284
Number of extensions: 21478648
Number of successful extensions: 68797
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 64617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68738
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 70914189703
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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