Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30087
         (823 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   231   3e-61
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    30   2.3  
Z81506-2|CAB04129.1|  257|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z92832-2|CAB07371.1|  431|Caenorhabditis elegans Hypothetical pr...    29   4.0  
AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical...    29   4.0  
AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical...    29   4.0  
Z69885-4|CAA93757.1|  208|Caenorhabditis elegans Hypothetical pr...    29   5.3  
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    28   7.0  
AF399825-1|AAK77200.1| 1262|Caenorhabditis elegans separase prot...    28   9.3  
AC024791-1|AAF60651.1| 1262|Caenorhabditis elegans Separase prot...    28   9.3  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  231 bits (566), Expect = 3e-61
 Identities = 110/172 (63%), Positives = 129/172 (75%)
 Frame = +1

Query: 1   KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 180
           KHLKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  KI+ 
Sbjct: 6   KHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILT 65

Query: 181 QRLIKVDGKVRTEPTYPTGFMRCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 360
           QR+++VDGKVRT   +PTGFM    IE+TNE FR++YD KGR+ +HRI   EA +KLCKV
Sbjct: 66  QRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKV 125

Query: 361 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFGLG 516
           K V T  K VP L T DGRTIRYPDP +KVND+I  +I+T KI D +KF  G
Sbjct: 126 KSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPG 177



 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 32/58 (55%), Positives = 39/58 (67%)
 Frame = +3

Query: 513 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTSPRG*TTCS*IGKGTKGV 686
           GNL  +TGGRN+GRVG I  RER PG+ DI+HIKDS GH+     +    IGKG K +
Sbjct: 177 GNLAYVTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKAL 234


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +1

Query: 301 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 432
           G+  + R+T  E  Y+ CK+++ A   K VP     Y+V H  R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>Z81506-2|CAB04129.1|  257|Caenorhabditis elegans Hypothetical
           protein F16H6.3 protein.
          Length = 257

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 20/72 (27%), Positives = 29/72 (40%)
 Frame = -1

Query: 784 MRGRTFGRECALSPLPSANGEGGSPLPARQRRCTPFVPLPIYEHVVQPRGEVCPVESLMC 605
           +R  TF R   L  +P+A G G  P+    R   P++  PI   +V      CP     C
Sbjct: 52  VRTETFCR-VLLGVVPTAGGNGLRPVRCWTRGPAPYLTEPINPDLVVDGMATCPKTCGFC 110

Query: 604 TMSKEPGCLSRD 569
             +    C + D
Sbjct: 111 CKTSAYNCRNAD 122


>Z92832-2|CAB07371.1|  431|Caenorhabditis elegans Hypothetical
           protein F31D4.3 protein.
          Length = 431

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +2

Query: 572 PRETSRLLRHCAHQGLHGTHFATRLNNVFINRQGHEGRTSSLPRGQR 712
           P +TS++L HC      GT F  R  N  I     EG    + R  R
Sbjct: 147 PNDTSKVLAHCVGT-YQGTEFYNREVNFHIGEGSEEGLPEGVERALR 192


>AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13b protein.
          Length = 377

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +2

Query: 518 LVYDHGRP*LGACGHHRVPRETSRLLRH 601
           LV+D GR  +G+    R  RETS+LL+H
Sbjct: 207 LVFDDGRKKVGSSEGMRRSRETSQLLKH 234


>AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13a protein.
          Length = 326

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +2

Query: 518 LVYDHGRP*LGACGHHRVPRETSRLLRH 601
           LV+D GR  +G+    R  RETS+LL+H
Sbjct: 156 LVFDDGRKKVGSSEGMRRSRETSQLLKH 183


>Z69885-4|CAA93757.1|  208|Caenorhabditis elegans Hypothetical
           protein T04C10.4 protein.
          Length = 208

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 417 HHPLPRPTYQSQRFHPVRHRNYEDYGLH 500
           HH    PTY    F+P  H++Y+ + L+
Sbjct: 32  HHHHQSPTYPQSYFNPYSHQSYQQHHLN 59


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
            family protein 5 protein.
          Length = 938

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -3

Query: 458  ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 294
            E  ++ +  G   V P C   Y     PVA  +  H  Y A + ++R   N P T
Sbjct: 868  EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921


>AF399825-1|AAK77200.1| 1262|Caenorhabditis elegans separase
           protein.
          Length = 1262

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 548 QVTASRDHTQVPRPNLMKSIIFVVAMSNWM 459
           QV   RD +  PRPN++++ IF + +  W+
Sbjct: 499 QVLMHRDSSVRPRPNIIQNEIFGMCVIRWL 528


>AC024791-1|AAF60651.1| 1262|Caenorhabditis elegans Separase protein
           1 protein.
          Length = 1262

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 548 QVTASRDHTQVPRPNLMKSIIFVVAMSNWM 459
           QV   RD +  PRPN++++ IF + +  W+
Sbjct: 499 QVLMHRDSSVRPRPNIIQNEIFGMCVIRWL 528


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,218,486
Number of Sequences: 27780
Number of extensions: 495773
Number of successful extensions: 1518
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1515
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)