Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30087
         (823 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    25   0.85 
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    24   2.0  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   3.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.4  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   6.0  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   6.0  

>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 25.0 bits (52), Expect = 0.85
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 577 RDIPAPSTLCTSRTPRDTLRHE 642
           RD+P  ST  T+   RDT+  E
Sbjct: 137 RDLPGKSTTTTAEVKRDTINPE 158


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 577 RDIPAPSTLCTSRTPRDTLRHE 642
           RD+P  ST  T    RDT+  E
Sbjct: 137 RDLPGKSTTTTVEVKRDTINPE 158


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 381 RSGRHTLDFTQLVLSLLRGDTVDCESALNIID*TKQFISL 262
           R G+  +  T L+ ++L    + CE  +NI    K ++SL
Sbjct: 75  RYGQSAVGLTFLLGAILVQVAIICEGVMNIQKDNKSYLSL 114


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 133 RLKYALTGNEVLKIVKQRLIKVDGKVRTEPTYPT 234
           R K+ LTG   L   K RL+  +      P +P+
Sbjct: 182 RTKHRLTGETRLSATKGRLVITEPVGSVRPKFPS 215


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 611 DVHNVEGAGMSLAGHD 564
           DVH V GAG  +  HD
Sbjct: 110 DVHGVIGAGHWIGDHD 125


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 143 YFRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLS 42
           Y R  +R  T  +H ++    +DG+G Y   S S
Sbjct: 83  YNRMDMRNATYYQHQQDHGSGMDGMGGYRSASPS 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 259,164
Number of Sequences: 438
Number of extensions: 6338
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)