Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30086
(825 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 47 2e-05
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 41 0.001
12_01_0857 - 8043765-8043839,8044215-8044497,8044578-8044748,804... 36 0.039
08_02_0742 - 20630313-20630798 33 0.36
06_03_0052 - 16027570-16027617,16027789-16027795,16028103-160283... 32 0.48
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 32 0.48
10_06_0127 - 11027692-11027826,11027925-11027993,11029925-110300... 32 0.64
05_01_0054 + 379974-380215,380343-380556,381603-381892,382384-38... 32 0.64
01_06_1249 - 35714645-35716003,35716700-35716761,35717007-357171... 31 1.5
08_02_0354 + 16159825-16160192,16160408-16160600,16160794-16160799 30 2.6
08_02_0334 + 15867947-15868314,15868530-15868722,15868912-15868917 30 2.6
08_02_0461 - 17432493-17432878,17434327-17434611,17435911-17436406 29 4.5
08_02_0338 + 15916813-15917180,15917396-15917588,15917778-15917783 29 4.5
09_02_0589 + 10969195-10969325,10971135-10971607,10971894-109720... 29 5.9
02_05_0713 + 31159574-31160764 29 5.9
03_06_0389 - 33567385-33567969,33568052-33568402,33568646-335688... 28 7.8
>02_02_0095 +
6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 46.8 bits (106), Expect = 2e-05
Identities = 27/91 (29%), Positives = 45/91 (49%)
Frame = +1
Query: 166 EYQITPEETRLKVFMSCNLYYGYVPEVRQKRKQAFASVCLFGEDNNSTISGVWVWRGKEL 345
+Y+ E T F++ N G++ + RK AF + + G + + G+W++RG E+
Sbjct: 314 DYKYNDENT--VSFVTMNKVGGFLQRMDLCRKYAFGKMLVIGSEPPFKVKGLWLFRGPEI 371
Query: 346 VFPLSSDWQVDYESYDWKKLDPSSEETKKLV 438
D D E Y+W K+D S E K+ V
Sbjct: 372 P-KFVMDEVYDMELYEWTKVDISDEAQKERV 401
Score = 46.8 bits (106), Expect = 2e-05
Identities = 27/91 (29%), Positives = 45/91 (49%)
Frame = +1
Query: 166 EYQITPEETRLKVFMSCNLYYGYVPEVRQKRKQAFASVCLFGEDNNSTISGVWVWRGKEL 345
+Y+ E T F++ N G++ + RK AF + + G + + G+W++RG E+
Sbjct: 879 DYKYNDENT--VSFVTMNKVGGFLQRMDLCRKYAFGKMLVIGSEPPFKVKGLWLFRGPEI 936
Query: 346 VFPLSSDWQVDYESYDWKKLDPSSEETKKLV 438
D D E Y+W K+D S E K+ V
Sbjct: 937 P-KFVMDEVYDMELYEWTKVDISDEAQKERV 966
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 41.1 bits (92), Expect = 0.001
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +1
Query: 256 RKQAFASVCLFGEDNNSTISGVWVWRGKELVFPLSSDWQVDYESYDWKKLDPSSEETKK- 432
RK AF + + G + G+W++RG+++ D D E Y+W K+D S E K+
Sbjct: 353 RKYAFGKMLVIGSTPPFKVKGLWLFRGQDIP-KFVMDEVYDMELYEWTKVDLSDEAQKER 411
Query: 433 ---LVQDYFSWNGTD 468
+++D + G D
Sbjct: 412 VNAMIEDQEPFEGED 426
Score = 30.7 bits (66), Expect = 1.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 148 SHLGMPEYQITPEETRLKVFMSCNLYYGYV 237
+HL Y + T + M+CNLYYG+V
Sbjct: 167 THLASNTYLVGHSVTLADIVMTCNLYYGFV 196
>12_01_0857 -
8043765-8043839,8044215-8044497,8044578-8044748,
8044826-8045670,8045828-8046262,8046339-8046563,
8046700-8046781,8046814-8047067
Length = 789
Score = 35.9 bits (79), Expect = 0.039
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +1
Query: 382 ESYDWKKLDPSSEETKKLVQDYFSWNGTDKDGR-KFNQGKIFK*CRQTSSQC-IHISYN 552
E YDW ++ S E Y + G KDG K K F C+Q S+QC H+ +N
Sbjct: 696 EIYDWSAIESSLNEAW---DQYVARGGRHKDGHPKLGHKKDFPICQQVSNQCGFHVCHN 751
>08_02_0742 - 20630313-20630798
Length = 161
Score = 32.7 bits (71), Expect = 0.36
Identities = 18/75 (24%), Positives = 31/75 (41%)
Frame = +2
Query: 275 PSACLVKTTIPPSPECGCGAERSSCSRCRLIGRWTTSPTTGRNWILRARRPRNLSRTTSR 454
P ++++ PP P C CG S + + T P++ ARR R +
Sbjct: 25 PDPPSLRSSTPPDPSCHCGPSAGSTAAEVPHAGYATPPSSSHGEEEAARRRRRGRGEEAD 84
Query: 455 GTEPTKTVESSTRAR 499
G +P + V + + R
Sbjct: 85 GVDPVRAVTTKRQRR 99
>06_03_0052 -
16027570-16027617,16027789-16027795,16028103-16028341,
16028432-16028566,16028670-16028888
Length = 215
Score = 32.3 bits (70), Expect = 0.48
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +2
Query: 263 RLSHPSACLVKTTIPPSPECGCGAERSSCSRCRLI 367
R HP++ LV+ T PP P G G S SR RL+
Sbjct: 30 RAGHPTSALVRATAPPPPATGGG---GSSSRARLL 61
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 32.3 bits (70), Expect = 0.48
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +2
Query: 269 SHPSACLVKTTIPPSPECGCGAERSSC 349
SH C+ K PP P CGC +C
Sbjct: 206 SHAFVCVCKPAPPPPPPCGCSGGHGNC 232
>10_06_0127 -
11027692-11027826,11027925-11027993,11029925-11030011,
11030146-11030286
Length = 143
Score = 31.9 bits (69), Expect = 0.64
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 472 DGRKFNQGKIFK*C-RQTSSQCIHISYNNYKKLYKKETFKCK*VDVGNFRNCPQFIEFL 645
D R+ +G+I + C +T QC + + NYK +Y++ V V N N +EF+
Sbjct: 27 DERRALEGEIVRKCLARTDHQCSFVEHRNYKVVYRRYASLFFLVGVDNDENELAILEFI 85
>05_01_0054 +
379974-380215,380343-380556,381603-381892,382384-382560,
382705-383481,383572-383645,383757-383819,383919-384007,
384106-384201,384319-384978,385613-385687,386422-386492,
386578-386635,386900-387104,387379-387869
Length = 1193
Score = 31.9 bits (69), Expect = 0.64
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +2
Query: 389 TTGRNWILRARRPRNLSRTTSRGTEPTKTVESSTRARYSSNADKRPAN 532
T G W + +R R++ +RG + + V+S + R ++ A+ RP++
Sbjct: 197 TGGEGWEKKLKRKRSIGTVLNRGNDADRDVKSGGQHRPANEANPRPSD 244
>01_06_1249 -
35714645-35716003,35716700-35716761,35717007-35717181,
35717276-35717301,35717917-35717983,35719803-35719945,
35720337-35720349
Length = 614
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = +2
Query: 335 ERSSCSRCRLIGRWTTSPTTGRNWILRARRPRNLSRTTSRGTEPTKTVESSTRARYSSNA 514
ER +C + WT S W+L+ R P LS S+ ++ ++ + S+
Sbjct: 137 ERGERGKCSMWTLWTHSQLVVVGWLLKRRPPTKLSELESQLSQLQDELKKAKEQLLSTEH 196
Query: 515 DKRPA 529
KR A
Sbjct: 197 SKRRA 201
>08_02_0354 + 16159825-16160192,16160408-16160600,16160794-16160799
Length = 188
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 639 IFIKTSVINDFQSPCIHKCSAENDAALH 722
+ +K +++ D PC KCS EN+ +LH
Sbjct: 18 VLVKANILGDIY-PCPCKCSQENETSLH 44
>08_02_0334 + 15867947-15868314,15868530-15868722,15868912-15868917
Length = 188
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 639 IFIKTSVINDFQSPCIHKCSAENDAALH 722
+ +K +++ D PC KCS EN+ +LH
Sbjct: 18 VLVKANILGDIY-PCPCKCSQENETSLH 44
>08_02_0461 - 17432493-17432878,17434327-17434611,17435911-17436406
Length = 388
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +2
Query: 251 KSANRLSHPSACLVKTTIPPSPECGC--GAERSSCSRCR 361
+SA +H S L PPSPE C A C+RCR
Sbjct: 25 RSAGSSTHRSHDLDDGPAPPSPESSCRSNAAVCGCARCR 63
>08_02_0338 + 15916813-15917180,15917396-15917588,15917778-15917783
Length = 188
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 639 IFIKTSVINDFQSPCIHKCSAENDAALH 722
+ +K ++ D PC KCS EN+ +LH
Sbjct: 18 VLVKANIFGDIY-PCPCKCSQENETSLH 44
>09_02_0589 +
10969195-10969325,10971135-10971607,10971894-10972032,
10972645-10972722,10972886-10973055,10973199-10973467,
10973655-10973781,10973964-10974035,10975084-10975273,
10975480-10975879
Length = 682
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +3
Query: 576 RNIQM*IGGCWQFSELSSIYRIFIKTSVINDFQSPCIHKCSAENDAALHEKMITLAF 746
RN+ IG CW+ L+ +Y + S+ + + EN A H ++T+ F
Sbjct: 430 RNLVSLIGYCWERDHLALVYEYMAQGSICDRLRG----NIFVENQHASHYSILTITF 482
>02_05_0713 + 31159574-31160764
Length = 396
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/50 (22%), Positives = 24/50 (48%)
Frame = +1
Query: 277 VCLFGEDNNSTISGVWVWRGKELVFPLSSDWQVDYESYDWKKLDPSSEET 426
+C + + ++S +W W + P SD + S+ W K D + +++
Sbjct: 345 ICAKSKGESFSMSKIWQWSNVKGKLPAGSDNCSETASFPWMKRDATGDKS 394
>03_06_0389 -
33567385-33567969,33568052-33568402,33568646-33568848,
33569044-33569299,33569459-33569671,33569757-33569882,
33569965-33570102,33570191-33570536,33570630-33570896,
33571192-33571378,33571457-33571556,33571659-33571909,
33572242-33572428,33572562-33572573
Length = 1073
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 226 YGYVPEVRQKRKQAFASVC 282
YGY P ++QKR F+S+C
Sbjct: 636 YGYEPPIKQKRPGYFSSLC 654
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,275,277
Number of Sequences: 37544
Number of extensions: 567983
Number of successful extensions: 1521
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1517
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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