Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30085
         (848 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          25   1.2  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   3.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   3.6  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   3.6  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   8.2  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    22   8.2  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 467 LNRHHVSYKRKKSNFQSKK*SLHLRDRNRLGPEEEAD 577
           L RHH  YKR ++ F+ +       DR +   EEE++
Sbjct: 152 LKRHHPRYKRPRTTFEPRATDSRHYDRYK---EEESN 185


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 631 VFIKCCMWMIVCCLVSWGVGLFFWSQPVAIP 539
           ++I CCM +I    VSW   + FW    A+P
Sbjct: 248 IYIPCCMLVI----VSW---VSFWLDQSAVP 271


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 631 VFIKCCMWMIVCCLVSWGVGLFFWSQPVAIP 539
           ++I CCM +I    VSW   + FW    A+P
Sbjct: 248 IYIPCCMLVI----VSW---VSFWLDQSAVP 271


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +1

Query: 256 ELHNDLPLQKTELDLNSVVNIISPCKNNDYEPVTPKSE-SQLESDNEDRRTHLSKRKHLD 432
           E+H DLP + T   +    +II+P    D  P+    E S+   + E+ +  L+K   ++
Sbjct: 134 EIHRDLPGKSTTTTVEVKRDIINP---EDVIPIRRTGEGSKPIFEREEIKNVLTKINKIE 190

Query: 433 SDDS 444
             D+
Sbjct: 191 EHDT 194


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 295 DLNSVVNIISPCKNNDYEPVTPKSESQLESDN 390
           +LN + N + P K+ DYE V    +  L   N
Sbjct: 288 ELNRLSNGLGPIKDIDYENVQSLYQPHLRGLN 319


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 665 QRVERQE*WKLSKRSRMDQGNSKE 736
           Q VE+ E W    ++  + GN K+
Sbjct: 191 QSVEKSELWVYKSKASEEHGNKKK 214


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,370
Number of Sequences: 438
Number of extensions: 5079
Number of successful extensions: 37
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)