Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30084
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   161   1e-40
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   105   5e-24
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   102   6e-23
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    75   1e-14
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.66 
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual        27   2.0  
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    27   2.0  
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    27   2.6  
SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces po...    27   3.5  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    27   3.5  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    26   4.6  
SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase |Schizosaccha...    26   4.6  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    25   8.1  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.1  
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz...    25   8.1  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  161 bits (390), Expect = 1e-40
 Identities = 79/136 (58%), Positives = 94/136 (69%)
 Frame = +3

Query: 255 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKES 434
           LVDLEPGTMD+V+SG FG +FRPDN ++GQSGAGN WAKGHYTEGAEL D+VLDVVR+E+
Sbjct: 65  LVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVVRREA 124

Query: 435 ESCDCLQGFQLXXXXXXXXXXXXXXXXXXXXVKSTPTES*THYSVVPSPKVSDTVVEPYN 614
           E+CD LQGFQL                     +  P      +SV P+PK SDTVVEPYN
Sbjct: 125 EACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVVEPYN 184

Query: 615 ATSLSSPA*LKNTDET 662
           AT LS    ++N+DET
Sbjct: 185 AT-LSMHQLVENSDET 199



 Score =  113 bits (271), Expect = 3e-26
 Identities = 46/64 (71%), Positives = 55/64 (85%)
 Frame = +1

Query: 64  MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 243
           MREIVH+QAGQCGNQ+GA FW  I+DEHG+D  G YHG S+ Q ER+NVY+NEA+GGKYV
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60

Query: 244 PRAI 255
           PRA+
Sbjct: 61  PRAV 64


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  105 bits (253), Expect = 5e-24
 Identities = 55/142 (38%), Positives = 83/142 (58%), Gaps = 1/142 (0%)
 Frame = +3

Query: 246 PRHL-VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 422
           PR + VDLEP  +D VR+GP+  +F P+  V G+  A NN+A+GHYT G E++DSVL+ +
Sbjct: 67  PRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVLERI 126

Query: 423 RKESESCDCLQGFQLXXXXXXXXXXXXXXXXXXXXVKSTPTES*THYSVVPSPKVSDTVV 602
           R+ +++C  LQGF +                          +S   +SV P+P+VS +VV
Sbjct: 127 RRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQVSTSVV 186

Query: 603 EPYNATSLSSPA*LKNTDETLL 668
           EPYN+  L++ A L N+D T +
Sbjct: 187 EPYNSV-LTTHATLDNSDCTFM 207



 Score = 50.4 bits (115), Expect = 2e-07
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
 Frame = +1

Query: 64  MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTG------AYHGDSDLQLERINVYYNEA 225
           MRE++ +  GQ G QIG   WE+   EHGI P G        H ++    +    +++E 
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60

Query: 226 SGGKYVPRAI 255
             GK+VPR+I
Sbjct: 61  GQGKFVPRSI 70


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  102 bits (244), Expect = 6e-23
 Identities = 54/142 (38%), Positives = 79/142 (55%), Gaps = 1/142 (0%)
 Frame = +3

Query: 246 PRHL-VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 422
           PR + VDLEP  +D VR+GP+  +F P+  + G+  A NN+A+GHYT G ELVD V D +
Sbjct: 63  PRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTDKI 122

Query: 423 RKESESCDCLQGFQLXXXXXXXXXXXXXXXXXXXXVKSTPTES*THYSVVPSPKVSDTVV 602
           R+ +++C  LQGF +                          +S   +SV P+P+VS +VV
Sbjct: 123 RRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTSVV 182

Query: 603 EPYNATSLSSPA*LKNTDETLL 668
           EPYN+  L++ A L   D T +
Sbjct: 183 EPYNSV-LTTHATLDLADCTFM 203



 Score = 56.4 bits (130), Expect = 4e-09
 Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
 Frame = +1

Query: 64  MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLE--RINVYYNEASGGK 237
           MREI+ +  GQ G QIG   WE+   EHGI P G  + ++  Q      + +++E   GK
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60

Query: 238 YVPRAI 255
           YVPR+I
Sbjct: 61  YVPRSI 66


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 3/124 (2%)
 Frame = +3

Query: 255 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDSVLDVVRK 428
           L+DLEP  ++++ S  +G ++ P+N +  ++  GAGNNWA G Y+    + + ++D++ +
Sbjct: 66  LIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDMIDR 124

Query: 429 ESESCDCLQGFQLXXXXXXXXXXXXXXXXXXXXVKSTPTES*THYSVVP-SPKVSDTVVE 605
           E++  D L+GF L                        P +    YSV P S  VSD VV+
Sbjct: 125 EADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDVVVQ 184

Query: 606 PYNA 617
           PYN+
Sbjct: 185 PYNS 188



 Score = 68.9 bits (161), Expect = 7e-13
 Identities = 29/63 (46%), Positives = 44/63 (69%)
 Frame = +1

Query: 67  REIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 246
           REI+ LQAGQCGNQIG++FW+ +  EHGI P G     +   ++R +V++ ++   +Y+P
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62

Query: 247 RAI 255
           RAI
Sbjct: 63  RAI 65


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +2

Query: 512 LISKIRE--EYPDRIMNTLLSSPLAQSIRHCRRTIQC 616
           L+S +R    YP+R   T L S + QS+ HC  +  C
Sbjct: 197 LLSALRNLGHYPERASKTPLESQIIQSLFHCLNSENC 233


>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 366 AKGHYTEGAELVDSVLDVVRKESESCDCLQ 455
           A+GH   G ELV +  D +RK+SE+   L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 588 SDTVVEPYNATSLSSPA*LKNTDETLLHRTTKGSITTS 701
           +D +  P   + L     + + DETL+H  ++GS TTS
Sbjct: 289 ADKIPRPLLNSKLPRKTLVLDLDETLIHSVSRGSRTTS 326


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +1

Query: 103 NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERI 204
           N++G    E+++++  +DPT A   + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166


>SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 295

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 467 YTFPRWRHRVRYGHLLISKIREEYPDRIMNTLLSS 571
           Y   R +      HLL+  +   +PD+I+ TL S+
Sbjct: 121 YYLDRLKFEEAINHLLLPDVLPNFPDKIIETLYSN 155


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 297 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 398
           GP+G +F P  F+F  +G    NW+   Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +3

Query: 231 RQVRAPRHLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGN 359
           R+V AP+H      GT    RS     +FR ++  FGQ   GN
Sbjct: 486 REVFAPKH-ARRRLGTRFHSRSSHRPSVFRDNSVAFGQLDNGN 527


>SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 363

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 47  KITYTK*GKSFIYRPANVV 103
           +I+YT  G SFIYRP N++
Sbjct: 64  EISYT--GTSFIYRPGNII 80


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +3

Query: 318  RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDC 449
            RP   +F     G++   G   +  E  D ++ +  +  ESCDC
Sbjct: 955  RPSRLIF-YDNCGDSSGAGLCNKAYEHTDELITMAIERIESCDC 997


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 463 NLHIPSVAAPGPVWAPPHLKDP*RVPRQNHEH 558
           N+H PS        A   +++P  +P+QNHEH
Sbjct: 623 NIHHPSANLLDASAALNPVQNPLLMPQQNHEH 654


>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 255

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 355 PAPDCPKTKLSGRKICPKGPERTESMVPGSKS 260
           P+   PK  L  R I P GPE  +  + GS S
Sbjct: 20  PSTPPPKEVLHTRVIVPNGPEEIKLRLVGSHS 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,795,038
Number of Sequences: 5004
Number of extensions: 54610
Number of successful extensions: 166
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)