Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30084
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    24   1.6  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   1.6  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.8  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    22   5.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.6  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         21   8.7  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 178 DSDLQLERINVYYNEASGGKYVPRAISSTWSPAPWTLSAP 297
           D+ L+   I  Y N+  GG++V   I   W+P  +  + P
Sbjct: 72  DARLKFSNIAPYLNQIYGGQFVRDLI---WTPTVYVSNEP 108


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +3

Query: 399 VDSVLDVVRKESESCDCLQG 458
           +DS+++++R   ++CD L G
Sbjct: 106 IDSIINIIRVRVDACDRLWG 125


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 190 QLERINVYYNEASGGKYVPRAISSTWSPA 276
           QL+R ++ +N    G+  PR+ +++ SPA
Sbjct: 720 QLKRTDIIHNYIMRGEASPRSPNASPSPA 748


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +2

Query: 581 QSIRHCRRTIQCDFSQFTSLVEKHRRNLT 667
           Q   +CRR   C +S      +KH ++ T
Sbjct: 6   QECPYCRRNFSCYYSLKRHFQDKHEQSDT 34


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 270  APSRRDGAGHVLAAGGFIVVY 208
            APSR+ G+GH    GG +  Y
Sbjct: 1922 APSRQTGSGHG-GHGGLLTPY 1941


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = +2

Query: 191 SWSASMYTTMKPPAASTCPAPSRRLGARHHGLCPLR 298
           SW +   +      A  C A  R+ G+  +G+C  R
Sbjct: 68  SWQSKWLSINHSACAIRCLAQRRKGGSCRNGVCICR 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,099
Number of Sequences: 438
Number of extensions: 3815
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)