Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30083
         (851 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    27   0.29 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    26   0.38 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    26   0.38 

>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 26.6 bits (56), Expect = 0.29
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = -2

Query: 178 RRWERRASKSADTTHVFE---PIEDSASLTRVLAQTARL 71
           RRW+RR ++ A T   +E    +E+    TR L+   RL
Sbjct: 1   RRWDRREARRARTAFTYEQLVALENKFKTTRYLSVCERL 39


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 26.2 bits (55), Expect = 0.38
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = +1

Query: 73  VWRSAPKRALSSRCLQSAQKRV*CPRFSMLFAPIAVEAMKCKEENCEVGVVLERNSLIVL 252
           V RS P  +  SRC     K   C RF      +  ++ K KE+   V +VL+R  L + 
Sbjct: 468 VLRSPPAFS-HSRCPPEIHKSCICVRFIAEHTKMLEDSTKVKEDWKYVAMVLDRLFLWIF 526

Query: 253 SL 258
           +L
Sbjct: 527 TL 528


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 26.2 bits (55), Expect = 0.38
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = +1

Query: 73  VWRSAPKRALSSRCLQSAQKRV*CPRFSMLFAPIAVEAMKCKEENCEVGVVLERNSLIVL 252
           V RS P  +  SRC     K   C RF      +  ++ K KE+   V +VL+R  L + 
Sbjct: 468 VLRSPPAFS-HSRCPPEIHKSCICVRFIAEHTKMLEDSTKVKEDWKYVAMVLDRLFLWIF 526

Query: 253 SL 258
           +L
Sbjct: 527 TL 528


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,957
Number of Sequences: 438
Number of extensions: 4449
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)