Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30082
         (859 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    25   1.0  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   4.1  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   5.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   5.4  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   5.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   5.4  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    22   7.1  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    22   7.1  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    22   7.1  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    22   7.1  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   9.4  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   9.4  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   9.4  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   9.4  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 834 FPVGAHGQVLGPKRQTPGTS 775
           F +G HG +L P   TP  S
Sbjct: 49  FSMGGHGSLLSPSGNTPNKS 68


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/45 (22%), Positives = 20/45 (44%)
 Frame = +1

Query: 709  ANTLKGTGPNFHAFLKKGGSHFACTRGLPFWA*NLTVGPNRKNCL 843
            A+    T    H +++KG        G+P +  + ++  N +N L
Sbjct: 2038 ADATFNTNFTIHYWIEKGADRRKLVMGMPMYGQSFSLADNNQNGL 2082


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = +1

Query: 460 WSWSLWSASRCW 495
           W W LW  S+ W
Sbjct: 465 WIWLLWLLSQTW 476


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = +1

Query: 460 WSWSLWSASRCW 495
           W W LW  S+ W
Sbjct: 465 WIWLLWLLSQTW 476


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = +1

Query: 460 WSWSLWSASRCW 495
           W W LW  S+ W
Sbjct: 465 WIWLLWLLSQTW 476


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = +1

Query: 460 WSWSLWSASRCW 495
           W W LW  S+ W
Sbjct: 465 WIWLLWLLSQTW 476


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 559 GGKPVRSRLSEGFGGLLRYKVGLS 630
           GG+ +      GFG ++ ++ GLS
Sbjct: 245 GGEAISKHEYTGFGTVIEFQYGLS 268


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 559 GGKPVRSRLSEGFGGLLRYKVGLS 630
           GG+ +      GFG ++ ++ GLS
Sbjct: 246 GGEAISKHEYTGFGTVIEFQYGLS 269


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 559 GGKPVRSRLSEGFGGLLRYKVGLS 630
           GG+ +      GFG ++ ++ GLS
Sbjct: 246 GGEAISKHEYTGFGTVIEFQYGLS 269


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 425 LLLFRRQVENCFLVGGMRLQYVSL 354
           LL+F +Q+  CF V  +RL+   L
Sbjct: 181 LLIFVQQIPFCFFVRVIRLKIEDL 204


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 5/12 (41%), Positives = 7/12 (58%)
 Frame = +1

Query: 460 WSWSLWSASRCW 495
           W W +W  S+ W
Sbjct: 219 WIWLVWLLSQAW 230


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 5/12 (41%), Positives = 7/12 (58%)
 Frame = +1

Query: 460 WSWSLWSASRCW 495
           W W +W  S+ W
Sbjct: 452 WIWLVWLLSQAW 463


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +1

Query: 490 CWSGWPKLQVVWCHLRDHHGQEP 558
           C   + +   +  HLR H G++P
Sbjct: 255 CGKSYARPSTLKTHLRTHSGEKP 277


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 5/12 (41%), Positives = 7/12 (58%)
 Frame = +1

Query: 460 WSWSLWSASRCW 495
           W W +W  S+ W
Sbjct: 452 WIWLVWLLSQAW 463


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,371
Number of Sequences: 336
Number of extensions: 4795
Number of successful extensions: 22
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23763101
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)