Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30082
(859 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0127 + 41234826-41236136 144 1e-34
07_03_1085 - 23851852-23853165 142 4e-34
03_05_0830 + 28034179-28035492 142 4e-34
02_03_0333 + 17843605-17843661,17843713-17843881,17845606-178457... 31 1.6
03_06_0358 + 33366265-33366447,33367371-33367468,33367910-333689... 30 2.7
09_02_0036 + 3217163-3217584,3217752-3218322 29 3.6
05_01_0376 + 2943028-2943438 29 3.6
12_02_0247 + 16409988-16411367 29 4.7
09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,851... 29 4.7
02_05_0594 + 30222032-30222145,30222401-30222493 29 4.7
02_03_0180 - 16031366-16031445,16031950-16032022,16032148-160321... 29 4.7
07_01_0743 + 5678086-5678098,5678436-5678560,5678666-5678800,567... 29 6.3
03_04_0223 + 18892459-18892765,18892976-18893652 29 6.3
12_01_0264 - 1929022-1930212 28 8.3
>01_07_0127 + 41234826-41236136
Length = 436
Score = 144 bits (348), Expect = 1e-34
Identities = 74/104 (71%), Positives = 87/104 (83%), Gaps = 3/104 (2%)
Frame = +1
Query: 1 QLFIS--ADRPNVAGLILAGSADFKTELSQSDMFDPRLQAKIIKLVDVSYGGENGFNQAI 174
Q FI+ +PNV+GLI+AGSADFKTELSQSDMFD RLQAKI+K+VDVSYGGENGFNQAI
Sbjct: 210 QFFINPATSQPNVSGLIIAGSADFKTELSQSDMFDQRLQAKILKVVDVSYGGENGFNQAI 269
Query: 175 ELAAESLQNVKFIQEKKLIGRYFDEISR-TQESIASVSMIHCAL 303
E++AE L NVKFIQEKKLIG+YF+EIS+ T + + SV AL
Sbjct: 270 EISAEELSNVKFIQEKKLIGKYFEEISQDTGKYVFSVDDTMSAL 313
Score = 112 bits (269), Expect = 4e-25
Identities = 51/85 (60%), Positives = 63/85 (74%)
Frame = +3
Query: 255 QDTGKYCFGVDDTLRALELGSVETLICWENLDIQRYVLKSHATNQETILHLTPEQEKDKS 434
QDTGKY F VDDT+ ALE+G+VETLI WENLDI RYVLK+ T + T+ HL QE D+S
Sbjct: 297 QDTGKYVFSVDDTMSALEMGAVETLIVWENLDINRYVLKNSVTGETTVKHLNKAQETDQS 356
Query: 435 HFTDKESGVELELVECQPLLEWLAK 509
+F DK + ELE++E LLEW A+
Sbjct: 357 NFRDKATSAELEVIEKTLLLEWFAE 381
Score = 48.0 bits (109), Expect = 1e-05
Identities = 19/27 (70%), Positives = 24/27 (88%)
Frame = +2
Query: 506 QNYKSFGATLEIITDKSQEGSQFVRGF 586
+NY+ FG +LE +T+KSQEGSQFVRGF
Sbjct: 381 ENYRQFGCSLEFVTNKSQEGSQFVRGF 407
>07_03_1085 - 23851852-23853165
Length = 437
Score = 142 bits (343), Expect = 4e-34
Identities = 70/88 (79%), Positives = 79/88 (89%), Gaps = 2/88 (2%)
Frame = +1
Query: 1 QLFIS--ADRPNVAGLILAGSADFKTELSQSDMFDPRLQAKIIKLVDVSYGGENGFNQAI 174
Q FI+ +PNV+GLILAGSADFKTELSQSDMFD RLQAKI+ +VDVSYGGENGFNQAI
Sbjct: 210 QFFINPATSQPNVSGLILAGSADFKTELSQSDMFDQRLQAKILNVVDVSYGGENGFNQAI 269
Query: 175 ELAAESLQNVKFIQEKKLIGRYFDEISR 258
EL+AE L NVKFIQEKKLIG+YF+EIS+
Sbjct: 270 ELSAEILANVKFIQEKKLIGKYFEEISQ 297
Score = 109 bits (263), Expect = 2e-24
Identities = 51/84 (60%), Positives = 61/84 (72%)
Frame = +3
Query: 255 QDTGKYCFGVDDTLRALELGSVETLICWENLDIQRYVLKSHATNQETILHLTPEQEKDKS 434
QDTGKY FGVDDTL+ALE+G+VETLI WENL+ RYVLK+ A+ + I H EQE D+S
Sbjct: 297 QDTGKYVFGVDDTLKALEMGAVETLIVWENLETNRYVLKNSASGETVIKHFNKEQEADQS 356
Query: 435 HFTDKESGVELELVECQPLLEWLA 506
+F D S ELE+ E LLEW A
Sbjct: 357 NFRDPASNAELEVQEKMSLLEWFA 380
Score = 45.6 bits (103), Expect = 5e-05
Identities = 23/46 (50%), Positives = 29/46 (63%)
Frame = +2
Query: 512 YKSFGATLEIITDKSQEGSQFVRGFRKDSAVSSVTKLDFPIRCSFD 649
YK FG +LE +T+KSQEGSQF RGF + + + IR SFD
Sbjct: 383 YKKFGCSLEFVTNKSQEGSQFCRGF---GGIGGILRYQLDIR-SFD 424
>03_05_0830 + 28034179-28035492
Length = 437
Score = 142 bits (343), Expect = 4e-34
Identities = 70/88 (79%), Positives = 79/88 (89%), Gaps = 2/88 (2%)
Frame = +1
Query: 1 QLFIS--ADRPNVAGLILAGSADFKTELSQSDMFDPRLQAKIIKLVDVSYGGENGFNQAI 174
Q FI+ +PNV+GLILAGSADFKTELSQSDMFD RLQAKI+ +VDVSYGGENGFNQAI
Sbjct: 210 QFFINPATSQPNVSGLILAGSADFKTELSQSDMFDQRLQAKILNVVDVSYGGENGFNQAI 269
Query: 175 ELAAESLQNVKFIQEKKLIGRYFDEISR 258
EL+AE L NVKFIQEKKLIG+YF+EIS+
Sbjct: 270 ELSAEILANVKFIQEKKLIGKYFEEISQ 297
Score = 112 bits (269), Expect = 4e-25
Identities = 51/84 (60%), Positives = 62/84 (73%)
Frame = +3
Query: 255 QDTGKYCFGVDDTLRALELGSVETLICWENLDIQRYVLKSHATNQETILHLTPEQEKDKS 434
QDTGKY FGVDDTL+ LE+G+VETLI WENLD+ RYVLK+ AT + I HL EQE D+S
Sbjct: 297 QDTGKYVFGVDDTLKTLEMGAVETLIVWENLDVNRYVLKNSATGETAIKHLNKEQEADQS 356
Query: 435 HFTDKESGVELELVECQPLLEWLA 506
+F D + ELE+ + LLEW A
Sbjct: 357 NFRDTSTNAELEVQDKTSLLEWFA 380
Score = 47.2 bits (107), Expect = 2e-05
Identities = 24/46 (52%), Positives = 29/46 (63%)
Frame = +2
Query: 512 YKSFGATLEIITDKSQEGSQFVRGFRKDSAVSSVTKLDFPIRCSFD 649
YK FG TLE +T+KSQEGSQF RGF + + + IR SFD
Sbjct: 383 YKKFGCTLEFVTNKSQEGSQFCRGF---GGIGGILRYQLDIR-SFD 424
>02_03_0333 +
17843605-17843661,17843713-17843881,17845606-17845723,
17845725-17846358,17846457-17846526,17847680-17847804,
17848146-17848270,17848638-17848730,17849714-17849753
Length = 476
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +3
Query: 396 ILHLTPEQ--EKDKSHFTDKESGVELELVECQP 488
+LH +PE ++D HF K+SG LEL+ +P
Sbjct: 198 LLHESPESILQQDDLHFIQKDSGETLELLSIEP 230
>03_06_0358 +
33366265-33366447,33367371-33367468,33367910-33368945,
33369042-33369554,33370456-33370644,33370715-33370848,
33371196-33371358
Length = 771
Score = 29.9 bits (64), Expect = 2.7
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = -1
Query: 769 GNRPFLKTRG-NLAPFPSKCL-PSLNKSVELSVIRLVEFPRSVEAASDWKVQLCNGGDRR 596
G+ L+TRG +L+ K PS+ +++E S+ R+ E ++ AA DW + G R
Sbjct: 353 GHSSLLETRGLSLSSVLMKQFKPSVEQALESSLRRIEESTAALAAADDWVLTYPPSGIRT 412
Query: 595 ILPKAANEL 569
+A+ L
Sbjct: 413 FARSSASSL 421
>09_02_0036 + 3217163-3217584,3217752-3218322
Length = 330
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +3
Query: 396 ILHLTPEQ--EKDKSHFTDKESGVELELVECQP 488
+LH +PE E+D HF K+SG LEL +P
Sbjct: 169 LLHESPESTLEQDDLHFIQKDSGETLELHSKEP 201
>05_01_0376 + 2943028-2943438
Length = 136
Score = 29.5 bits (63), Expect = 3.6
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -3
Query: 185 AASSIA*LKPFSPPYDTSTSFMILAWRRG--SNISDWDSSVLKSAEPARMR 39
AA+++A + P +T ILAWR+G N+ + D S S E R R
Sbjct: 21 AAAAVAGPRRVKLPMPQATIGFILAWRKGPSPNLEEMDDSEFLSPEHRRQR 71
>12_02_0247 + 16409988-16411367
Length = 459
Score = 29.1 bits (62), Expect = 4.7
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Frame = +1
Query: 538 DHHGQEPGGKPVRSRLSEGF------GGLLRYKVGLSNPMQLRP-TEEIRPI*LP--TIR 690
DHHGQ P G L+ GF GG + + G S+ P T + PI LP +
Sbjct: 107 DHHGQLPAGDDAVESLALGFEPVEARGGFVVARTGRSSGEVCNPMTGYVLPIPLPRKDLV 166
Query: 691 PTYLSL-ANTLKGTGPN 738
+YL L A+ G GP+
Sbjct: 167 TSYLLLTADDGVGLGPS 183
>09_02_0393 +
8510089-8510274,8510450-8510806,8510889-8511011,
8511209-8511523,8511576-8511682,8512559-8512629,
8512952-8513029,8513390-8513454,8514224-8514274,
8514373-8514414,8514785-8515105,8515154-8517880
Length = 1480
Score = 29.1 bits (62), Expect = 4.7
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Frame = +1
Query: 43 ILAGSADFKTELSQSDMFDPRLQAKIIKLVDVSYGGENGFNQAIELAAES--LQNVKFIQ 216
+L G FK + ++ +A ++L+ + G G L +QN IQ
Sbjct: 637 LLDGCLTFKKRRLKEHEYET-CKAGAVRLISIVAMGGMGKTTLARLVYNDARVQNHFDIQ 695
Query: 217 EKKLIGRYFDEISRTQESIASVSMIHCALSNSDPSRR 327
+ FDE+ T+ +I SV+ C L+ +P +R
Sbjct: 696 AWVWVSEVFDEVRLTKAAIESVTAKPCDLTELEPLQR 732
>02_05_0594 + 30222032-30222145,30222401-30222493
Length = 68
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 164 LKPFSPPYDTSTSFMILAWRRGSNISDWDSSVLKSAEPA 48
+KP S ST F+ A R + DW +VL S+ PA
Sbjct: 23 VKPISYKCTPSTVFLTPASYRATTSGDWRCAVLSSSSPA 61
>02_03_0180 -
16031366-16031445,16031950-16032022,16032148-16032186,
16032434-16032715,16032790-16032948,16033034-16033390,
16033482-16033622,16033919-16034045,16034121-16034263,
16034740-16034917,16035019-16035552,16035628-16035812,
16036551-16036637,16036710-16036850,16036896-16037175,
16037944-16038020,16038326-16039138,16039292-16039801,
16039926-16040056,16040192-16040246,16040364-16040564,
16040640-16040909,16041103-16041184,16041271-16041434,
16041532-16041690,16041762-16042083,16042158-16042544,
16042811-16042999,16043233-16043317,16043458-16043753,
16043862-16043965,16044484-16044513,16044602-16044817,
16044923-16045540,16045718-16045993,16046619-16046762,
16046854-16046962,16047291-16047475,16047557-16047670,
16048348-16048479,16048929-16049249,16049424-16049891,
16054482-16054547,16054691-16054828,16054917-16055015,
16057098-16057194,16057661-16057761,16057858-16058085,
16059175-16059381,16059451-16059571,16059921-16059988,
16060148-16060213,16060396-16060509,16060949-16061300,
16063571-16063663,16063764-16063922,16064224-16064287,
16064385-16064577,16064673-16064710,16065510-16065645,
16065726-16065914,16065994-16066095,16067660-16067777,
16067861-16067964,16070338-16070346,16071428-16071475,
16071581-16071676,16072430-16072533,16073964-16074045,
16076573-16076601,16076708-16076963
Length = 4246
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 377 MRLQYVSLYVEVLPADQRLDGSEFESAQCIIDTEAIL 267
+R +YV LY +L +D SE + I+DT+ I+
Sbjct: 537 LRRRYVHLYATLLQQASNVDMSEIRQIEKILDTKVII 573
>07_01_0743 +
5678086-5678098,5678436-5678560,5678666-5678800,
5679128-5679200,5679581-5679654,5680292-5680396,
5680637-5680881,5680965-5681052,5681202-5681244,
5681319-5681475,5681648-5681776,5682012-5682084,
5682281-5682445,5682530-5682544,5682651-5682780,
5684517-5684651,5684880-5684945,5685088-5685170,
5685503-5685549,5685736-5685814,5685914-5686006
Length = 690
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +2
Query: 536 EIITDKSQEGSQFVRGFRKDSAVS-SVTKLD-FPIRCSFDRPRKFDQSNYRQFD 691
E++ DKS +G +V+G A S + K D + C ++ S +RQ+D
Sbjct: 266 EVLYDKSPDGETYVKGLLLSKATSREIIKADAYVAACDVPGIKRLLPSEWRQWD 319
>03_04_0223 + 18892459-18892765,18892976-18893652
Length = 327
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +3
Query: 396 ILHLTPEQ--EKDKSHFTDKESGVELELVECQP 488
+LH +PE E+D HF K+SG +EL +P
Sbjct: 227 LLHESPESIIEQDDLHFIQKDSGKTVELQSKEP 259
>12_01_0264 - 1929022-1930212
Length = 396
Score = 28.3 bits (60), Expect = 8.3
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = +3
Query: 717 FEGNGAKFPRVFKKGRFPF--CLYP-GFAFLGLKPDRGP 824
F+ N K+ +V K R PF C P G FLGL D GP
Sbjct: 229 FDTNSIKWHKVDDK-RLPFTGCAAPHGSVFLGLSKDNGP 266
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,447,593
Number of Sequences: 37544
Number of extensions: 609287
Number of successful extensions: 1595
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1594
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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