Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30082
(859 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3577| Best HMM Match : No HMM Matches (HMM E-Value=.) 81 1e-15
SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 32 0.52
SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.52
SB_28158| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_27380| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_5266| Best HMM Match : VWA (HMM E-Value=0) 29 4.8
SB_39797| Best HMM Match : VWA (HMM E-Value=6e-26) 29 4.8
SB_39196| Best HMM Match : Phage_GP20 (HMM E-Value=3.9) 29 4.8
SB_29369| Best HMM Match : GIY-YIG (HMM E-Value=0.56) 29 4.8
SB_13733| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_413| Best HMM Match : Phage_GP20 (HMM E-Value=3.9) 29 4.8
SB_26934| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051) 29 6.4
SB_32615| Best HMM Match : TetR_N (HMM E-Value=8.2) 28 8.5
SB_54287| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_19903| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_15617| Best HMM Match : Glycoprotein_G (HMM E-Value=4.8) 28 8.5
SB_766| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_3577| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1164
Score = 80.6 bits (190), Expect = 1e-15
Identities = 50/91 (54%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Frame = +1
Query: 1 QLFISADRPNVAGLILAGSADFKTELSQSDMFDPRLQAKIIKLVDVSYGGENGFNQAIEL 180
QLFI+ D+PN+ G+ILAGSADFK+ELSQSDMFD QAIEL
Sbjct: 988 QLFITNDKPNITGMILAGSADFKSELSQSDMFD----------------------QAIEL 1025
Query: 181 AAESLQNVKFIQEKKLIGRYF-DEISRTQES 270
A+E L NVKFIQEKKLIG+Y E+ QE+
Sbjct: 1026 ASEVLANVKFIQEKKLIGKYLVGEVYSRQET 1056
Score = 51.6 bits (118), Expect = 8e-07
Identities = 22/26 (84%), Positives = 25/26 (96%)
Frame = +2
Query: 509 NYKSFGATLEIITDKSQEGSQFVRGF 586
NYK+FGATLEIITDKSQEG+QF +GF
Sbjct: 1094 NYKNFGATLEIITDKSQEGAQFCKGF 1119
Score = 35.9 bits (79), Expect = 0.042
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3
Query: 450 ESGVELELVECQPLLEWLA 506
ESGVELELV+ PLLEWLA
Sbjct: 1074 ESGVELELVDKNPLLEWLA 1092
>SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1973
Score = 32.3 bits (70), Expect = 0.52
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +3
Query: 285 DDTLRALELGSVETLICWENLDIQRYVLKSHATNQETILH--LTPEQEKDKSHFT 443
DDT R LE+ E L C+ QRYV K + +T+ H LT ++ HFT
Sbjct: 1324 DDTCRELEVAKSEYLYCY-----QRYVYKCNERKMKTLKHRILTHFSQELVGHFT 1373
>SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1176
Score = 32.3 bits (70), Expect = 0.52
Identities = 20/76 (26%), Positives = 33/76 (43%)
Frame = +1
Query: 331 SAGRTSTYKDTY*SRMPPTRKQFST*RLNKRRTNHISPTKRAEWSWSLWSASRCWSGWPK 510
SAG T++Y + Y S P Q N N I+P + W+ S+ +S+ +
Sbjct: 765 SAGNTTSYSNGYQSSAYPLINQTDNMN-NTEMNNMINPDNSSSWNSSIDGSSQQKMNARE 823
Query: 511 LQVVWCHLRDHHGQEP 558
L + W +G +P
Sbjct: 824 LYMAWLKKEHENGDKP 839
>SB_28158| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 256
Score = 30.3 bits (65), Expect = 2.1
Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
Frame = -1
Query: 838 NFSCWGPRSG---FRPKKANPGYKQNGNRPFLKTRGNLAPFPSKCLPSLNKSVELSVIRL 668
N S W P SG N Q N KTR N+ P L LN+ ++ +
Sbjct: 149 NKSTWTPSSGRDNSLDTSPNSVKLQIQNSTLNKTRSNITPGERNALTQLNQRQDIIIKPA 208
Query: 667 VEFPRSVEAASDWKVQLCN 611
+ +V DW + CN
Sbjct: 209 DKGSGTVVMDKDWYINECN 227
>SB_27380| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 509
Score = 29.5 bits (63), Expect = 3.7
Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
Frame = -1
Query: 838 NFSCWGPRSGFRPKK---ANPGYKQNGNRPFLKTRGNLAPFPSKCLPSLNKSVELSVIRL 668
N S W P SG N Q N KTR N+ P L LN+ ++ +
Sbjct: 70 NKSTWTPSSGRDNSLDTFLNSVKLQIQNSTLNKTRSNITPGERNALTQLNQKQDIIIKPA 129
Query: 667 VEFPRSVEAASDWKVQLCN 611
+ +V DW + CN
Sbjct: 130 DKGSGTVVMDKDWYINECN 148
>SB_5266| Best HMM Match : VWA (HMM E-Value=0)
Length = 797
Score = 29.1 bits (62), Expect = 4.8
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = +1
Query: 19 DRPNVAGLILAGSADFKTELSQSDMFDPRLQAKIIKLVDVSYGGENGFNQAIELAAESLQ 198
D+PNV +I G E + S + P L AK ++++ V GG+ ++ + +A + +
Sbjct: 69 DKPNVLIVITDGKIHPNFEDNYSKVIPP-LIAKGVRIIAVGVGGQVKKSELLTIANKKAE 127
Query: 199 NV 204
NV
Sbjct: 128 NV 129
>SB_39797| Best HMM Match : VWA (HMM E-Value=6e-26)
Length = 317
Score = 29.1 bits (62), Expect = 4.8
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = +1
Query: 19 DRPNVAGLILAGSADFKTELSQSDMFDPRLQAKIIKLVDVSYGGENGFNQAIELAAESLQ 198
D+PNV +I G E + S + P L AK ++++ V GG+ ++ + +A + +
Sbjct: 233 DKPNVLIVITDGKIHPNFEDNYSKVIPP-LIAKGVRIIAVGVGGQVKKSELLTIANKKAE 291
Query: 199 NV 204
NV
Sbjct: 292 NV 293
>SB_39196| Best HMM Match : Phage_GP20 (HMM E-Value=3.9)
Length = 201
Score = 29.1 bits (62), Expect = 4.8
Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
Frame = -1
Query: 838 NFSCWGPRSGFRPKK---ANPGYKQNGNRPFLKTRGNLAPFPSKCLPSLNKSVELSVIRL 668
N S W P SG N Q N KTR N+ P L LN+ ++ +
Sbjct: 30 NKSTWTPSSGRDNSLDTFLNSVKLQIQNSTLNKTRSNITPGERNALTQLNQRQDIIIKPA 89
Query: 667 VEFPRSVEAASDWKVQLCN 611
+ +V DW + CN
Sbjct: 90 DKGSGTVVMDKDWYINECN 108
>SB_29369| Best HMM Match : GIY-YIG (HMM E-Value=0.56)
Length = 785
Score = 29.1 bits (62), Expect = 4.8
Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
Frame = -1
Query: 838 NFSCWGPRSGFRPKK---ANPGYKQNGNRPFLKTRGNLAPFPSKCLPSLNKSVELSVIRL 668
N S W P SG N Q N KTR N+ P L LN+ ++ +
Sbjct: 349 NKSTWTPSSGRDNSLDTFLNSVKLQIQNSTLNKTRSNITPGERNALTQLNQRQDIIIKPA 408
Query: 667 VEFPRSVEAASDWKVQLCN 611
+ +V DW + CN
Sbjct: 409 DKGSGTVVMDKDWYINECN 427
>SB_13733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1455
Score = 29.1 bits (62), Expect = 4.8
Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
Frame = -1
Query: 838 NFSCWGPRSGFRPKK---ANPGYKQNGNRPFLKTRGNLAPFPSKCLPSLNKSVELSVIRL 668
N S W P SG N Q N KTR N+ P L LN+ ++ +
Sbjct: 113 NKSTWTPSSGRDNSLDTFLNSVKLQIQNSTLNKTRSNITPGERNALTQLNQRQDIIIKPA 172
Query: 667 VEFPRSVEAASDWKVQLCN 611
+ +V DW + CN
Sbjct: 173 DKGSGTVVMDKDWYINECN 191
>SB_413| Best HMM Match : Phage_GP20 (HMM E-Value=3.9)
Length = 179
Score = 29.1 bits (62), Expect = 4.8
Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
Frame = -1
Query: 838 NFSCWGPRSGFRPKK---ANPGYKQNGNRPFLKTRGNLAPFPSKCLPSLNKSVELSVIRL 668
N S W P SG N Q N KTR N+ P L LN+ ++ +
Sbjct: 8 NKSTWTPSSGRDNSLDTFLNSVKLQIQNSTLNKTRSNITPGERNALTQLNQRQDIIIKPA 67
Query: 667 VEFPRSVEAASDWKVQLCN 611
+ +V DW + CN
Sbjct: 68 DKGSGTVVMDKDWYINECN 86
>SB_26934| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051)
Length = 1443
Score = 28.7 bits (61), Expect = 6.4
Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
Frame = -1
Query: 838 NFSCWGPRSGFRPKK---ANPGYKQNGNRPFLKTRGNLAPFPSKCLPSLNKSVELSVIRL 668
N S W P SG N Q N KTR N+ P L LN+ ++ +
Sbjct: 216 NKSSWTPSSGRDNSLDTFLNSVKLQIQNSTLNKTRSNITPGERHALTQLNQRQDIIIKLA 275
Query: 667 VEFPRSVEAASDWKVQLCN 611
+ +V DW + CN
Sbjct: 276 DKGSGTVVMDKDWYINECN 294
>SB_32615| Best HMM Match : TetR_N (HMM E-Value=8.2)
Length = 114
Score = 28.3 bits (60), Expect = 8.5
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +2
Query: 272 LLRCR*YTARSRTR-IRRDVDLLGEPRHTKIRI 367
LL CR Y TR +RR VD + EPR T++RI
Sbjct: 58 LLPCRIYLFGFGTRTVRRFVDDIIEPRMTRLRI 90
>SB_54287| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -1
Query: 751 KTRGNLAPFPSKCLPSLNKSVELSVIRLVEFPRSVEAASDWKVQLCN 611
KTR N+ P L LN+ E+ + + +V DW + CN
Sbjct: 24 KTRSNITPGERNALTQLNQRQEIIIKPADKGSGTVVMDKDWYINECN 70
>SB_19903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 560
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 823 GPRSGFRPKKANPGYKQNGNRPFLKTRG 740
GPR G+ ++ PGYK G P + G
Sbjct: 448 GPRPGYGLTRSRPGYKLTGQHPGYEMTG 475
>SB_15617| Best HMM Match : Glycoprotein_G (HMM E-Value=4.8)
Length = 554
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Frame = -3
Query: 401 ENCFLVGGMRLQYVSLYVEVLPADQRLDG--SEFESAQCIIDTEAILS---CVLEISSK* 237
+NC + + +Y A ++ G S +ESA C++D+E +++ CV+ + +K
Sbjct: 49 KNCEFQAFLATESPDIYKRTFEAVEQCGGRTSLYESADCLVDSENLVASNCCVMMVDAKE 108
Query: 236 R 234
R
Sbjct: 109 R 109
>SB_766| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1704
Score = 28.3 bits (60), Expect = 8.5
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Frame = +1
Query: 373 RMPPTRKQFST*RLN----KRRTNHISPTKRAEWSWSLWSASRCWSGWPKLQVVWCHLRD 540
R P TR+ + L K T SP +W+ + C + + V+ HL+
Sbjct: 1027 RRPETRENYFNSLLAHIRIKAGTRKKSPVSARIRTWAT-AVEGCGKVFAAMGVLTSHLKS 1085
Query: 541 HHGQEPGGKPV 573
H G+ P G PV
Sbjct: 1086 HSGERPHGCPV 1096
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,289,670
Number of Sequences: 59808
Number of extensions: 667387
Number of successful extensions: 1985
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1983
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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