Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30082
         (859 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.68 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    25   1.2  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    25   1.2  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.4 bits (53), Expect = 0.68
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 636 DAASTDRGNSTNLITDNSTDLFKLGKHFEGNGAK 737
           +A  T+ G ST L TD +++  +   H++ +GAK
Sbjct: 58  NALRTELGASTKLATDTTSENEENYPHYQMSGAK 91


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 127 LVDVSYGGENGFNQAIELAAESL 195
           ++D SYGG  GF  A+ L ++ L
Sbjct: 660 IIDHSYGGGFGFGSAVLLISDRL 682


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 127 LVDVSYGGENGFNQAIELAAESL 195
           ++D SYGG  GF  A+ L ++ L
Sbjct: 698 IIDHSYGGGFGFGSAVLLISDRL 720


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 260,891
Number of Sequences: 438
Number of extensions: 6240
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)