Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30081
(757 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1206 - 9702128-9702184,9702272-9702323,9702410-9702471,970... 61 8e-10
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 31 1.3
03_06_0399 - 33632811-33633107,33633236-33633385,33633705-336340... 30 1.7
11_01_0127 + 1031690-1031952,1032850-1032857,1034679-1034927,103... 30 2.3
05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818 29 3.0
02_01_0699 - 5220896-5221345,5221403-5221504,5221694-5222343,522... 29 3.0
03_02_0755 + 10932897-10933010,10933446-10933577,10933666-109337... 29 4.0
02_03_0137 + 15624078-15624101,15624259-15624312,15624900-156249... 29 4.0
01_06_0213 + 27580635-27581105,27581206-27581298,27581376-275815... 29 4.0
11_04_0093 + 13407686-13409554 28 7.0
05_04_0168 + 18686024-18686824 28 7.0
09_06_0352 + 22472369-22472731,22472829-22472941,22473420-224742... 28 9.2
08_01_0045 + 322679-323347 28 9.2
02_04_0258 + 21339682-21339806,21340635-21340730,21340905-213409... 28 9.2
>01_01_1206 -
9702128-9702184,9702272-9702323,9702410-9702471,
9702578-9702665,9703027-9703095,9703224-9703281,
9703895-9703996,9704075-9704179,9704273-9704624,
9706005-9706100,9706427-9706501,9707192-9707370,
9707501-9707740,9707922-9708017,9708193-9708306,
9708428-9708527
Length = 614
Score = 61.3 bits (142), Expect = 8e-10
Identities = 26/69 (37%), Positives = 43/69 (62%)
Frame = +2
Query: 293 VDQASDARRQYTDAERTVREIESNIRNIKQNLEKDYGLEQEFASLDGDCFEYEDKEYVYK 472
+ +AS R++Y DA + +I+S I + L+ D+G E+EF CFE ++ +YVYK
Sbjct: 451 LSEASRVRKEYDDASSKLSKIQSRISTLTDKLKHDFGKEKEFYYFYDQCFESKEGKYVYK 510
Query: 473 LCMFQKVTQ 499
+C F+K +Q
Sbjct: 511 VCPFKKASQ 519
>11_04_0439 + 17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Frame = +2
Query: 245 DCVKQSKSYNDETQKIVDQASDARRQYTDAERTVREIESNIRNIKQNLEKDYGLEQE-FA 421
D V+++ S D+ KI+ R Q+TD + + ++ R+ ++L + LE E F
Sbjct: 850 DFVRRTSSSKDDFIKIILDDDILRSQFTDLDYDLLKLSYEHRDRLESLICE--LEAEGFF 907
Query: 422 SLDGDCFEYEDKEY 463
S+D D E+E++ +
Sbjct: 908 SVDDDSIEWENEHF 921
>03_06_0399 -
33632811-33633107,33633236-33633385,33633705-33634029,
33635315-33635982,33636967-33637212,33637405-33637545,
33637807-33637856,33637943-33638060,33638304-33638910,
33639339-33639463,33639813-33639869,33639952-33640023,
33640100-33640232,33640305-33640428,33640522-33640576,
33640672-33641322
Length = 1272
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +2
Query: 251 VKQSKSYNDETQKIVDQASDARRQYTDAERTVREIESNIRNI-KQNLEKDYGLEQEFASL 427
+++ K + E +K++DQ D D + N+ +QN EK + +
Sbjct: 523 MQKLKFGHQEQKKVMDQDEDDAEDCEDESENEMSYDLTPTNVVRQNSEKAKQMIARMFTD 582
Query: 428 DGDCFEYEDKEYVYKLCMFQKVTQK 502
D D +E+ D E + + Q+++++
Sbjct: 583 DNDTYEHSDDEEIEEHLARQRISKR 607
>11_01_0127 +
1031690-1031952,1032850-1032857,1034679-1034927,
1034938-1035009,1036609-1036724,1037482-1037545,
1037742-1037773,1037804-1037850,1038627-1038660,
1039308-1039652,1040425-1040718,1040968-1041232,
1041359-1041480,1041754-1042059
Length = 738
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/54 (22%), Positives = 31/54 (57%)
Frame = +2
Query: 275 DETQKIVDQASDARRQYTDAERTVREIESNIRNIKQNLEKDYGLEQEFASLDGD 436
D+ QK++++ R + + + + + +N+R + E DYG++++ +DG+
Sbjct: 677 DKLQKVLNRGKGKRGRPRGSGKRIAGVSANVRRRLEE-EMDYGVDEDEEMIDGE 729
>05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818
Length = 743
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/68 (22%), Positives = 32/68 (47%)
Frame = +2
Query: 254 KQSKSYNDETQKIVDQASDARRQYTDAERTVREIESNIRNIKQNLEKDYGLEQEFASLDG 433
KQ++ + ++ ++DQ + +R T VR + + +KQ + + L+ A +
Sbjct: 186 KQARMFQEKEASLLDQLTLTKRTVTSLNEEVRREKELVEQLKQEIHR---LKSSIAQAED 242
Query: 434 DCFEYEDK 457
D +E K
Sbjct: 243 DKHVFEGK 250
>02_01_0699 -
5220896-5221345,5221403-5221504,5221694-5222343,
5222445-5222793,5223189-5223510,5223621-5224123,
5224486-5224578,5224708-5224759,5224837-5225129,
5225208-5225630,5225734-5226070,5226185-5226220,
5226272-5226589,5227465-5228450
Length = 1637
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -3
Query: 515 PPSWIFVLPSGTYTVCIHILCLHIQSNHHPRKQIPVLD 402
PPS + LP+ CIH L L ++S P+ P LD
Sbjct: 61 PPSLLLGLPAAAADACIHALLLALES-ASPKVADPALD 97
>03_02_0755 +
10932897-10933010,10933446-10933577,10933666-10933750,
10934668-10934831,10934911-10935357
Length = 313
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = -3
Query: 515 PPSWIFVLPSGTYTVCIHILCLHIQSNHHPRKQIPVLDHNPFLSSVLCF 369
PPS++ + PSG + + I CL I SN+HP P L +++ F
Sbjct: 75 PPSFMLLTPSGRFEIQKKI-CLSI-SNYHPEHWQPSWSVRTALVALIAF 121
>02_03_0137 +
15624078-15624101,15624259-15624312,15624900-15624954,
15625192-15625296,15625682-15625722,15626057-15626162,
15627010-15627016,15627134-15627218,15627315-15627428
Length = 196
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +2
Query: 272 NDETQKIVDQASDARRQYTDAERTVREIESNIRNIKQNLEKDYGLEQEFASL 427
N++ QK+ D S T E +++ NI++ L++D GL ++ S+
Sbjct: 142 NEQEQKLNDSESAIASMQTSKEYLEKQLAEVENNIRELLQQDPGLARQILSM 193
>01_06_0213 +
27580635-27581105,27581206-27581298,27581376-27581540,
27581640-27581862,27582329-27582429,27582666-27582713,
27583086-27583172,27583745-27583879,27583985-27584140,
27585336-27585545,27585641-27586351,27586429-27586974,
27587872-27588495,27588595-27588699,27590460-27590711,
27590939-27591766
Length = 1584
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/46 (28%), Positives = 29/46 (63%)
Frame = +2
Query: 257 QSKSYNDETQKIVDQASDARRQYTDAERTVREIESNIRNIKQNLEK 394
+ ++Y+DE VD+ +R++ + + +E+E++ R I++ LEK
Sbjct: 140 ERRAYHDEDGSRVDR----KRKHNEEAKIAKEVEAHERRIRKELEK 181
>11_04_0093 + 13407686-13409554
Length = 622
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +2
Query: 566 INTLLMNIHKWKLLAGMVPVRNNQLVNVQPVDL 664
IN LL +IH+ +AG VP R++ L++V+ V +
Sbjct: 591 INDLLQDIHRIMRMAGTVP-RDHMLIDVELVGI 622
>05_04_0168 + 18686024-18686824
Length = 266
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -3
Query: 140 RGICFSILWFKHT-LLHHQKWF*DRPSCGQECIFIYFFIT 24
+G+ F + F+ LL KW D + G C+ I FF++
Sbjct: 226 KGVSFLVFTFRSAALLTKHKWEEDHEASGALCMVILFFVS 265
>09_06_0352 +
22472369-22472731,22472829-22472941,22473420-22474226,
22474314-22474620,22474862-22475027,22475491-22475534,
22476019-22476161,22477900-22477937,22478032-22478129,
22478130-22478220,22478514-22478693,22479311-22479495,
22479583-22479678,22480151-22480297,22480763-22480864,
22480932-22481564
Length = 1170
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Frame = +1
Query: 478 YVPEGNTKIQDGGMEVGLGNWGEWAGP-----ENNKYSVDEHTQ 594
++PE N ++ D ++ G W E + P +N++ D+H Q
Sbjct: 325 HLPEENEELHDSDLQQSRGEWNEGSNPFIPTEVHNEWHSDDHFQ 368
>08_01_0045 + 322679-323347
Length = 222
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 566 LFSGPAHSPQLPRPTSIPPSWIFVLP 489
LF+ H P P P+S PP W+ P
Sbjct: 28 LFATTRHLPCSPSPSSSPPVWLLSSP 53
>02_04_0258 +
21339682-21339806,21340635-21340730,21340905-21340980,
21341085-21341143,21341280-21341380,21341447-21341773,
21341861-21342021,21342100-21342303,21342735-21342966,
21343629-21344239
Length = 663
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 526 GLGNWGEWAGPENNKYSVDEHTQMEIACRN 615
GL + +W+ P+ N+ VD++ EI R+
Sbjct: 545 GLNPFDDWSQPQENRSGVDDYLMEEIRMRS 574
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,864,362
Number of Sequences: 37544
Number of extensions: 424566
Number of successful extensions: 1246
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1244
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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