Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30081
         (757 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    27   0.19 
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    24   1.3  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   2.3  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   2.3  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   3.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   4.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.4  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 27.1 bits (57), Expect = 0.19
 Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
 Frame = -3

Query: 602 ISICVCSSTEYLLFSGPAHSPQL--PRPTSIPPSWIFVLPSGTYTVCIHILCLHIQSNHH 429
           +++C  S   YL  + P   PQ+  PR   +  + +++L   ++ +C   L        H
Sbjct: 154 LNLCAISLDRYLAVTRPVSYPQIMSPRRARLLVATVWIL---SFVICFPPLVGWKDKRSH 210

Query: 428 PRKQIPVLDHNPFLSSVL 375
           P   +    + PF ++ +
Sbjct: 211 PAYNMTFAQNGPFNTTTI 228


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 473 VCIHILCLHIQSNHHPRKQIPVLDHN 396
           VC+ I C  + S  H RK    L+H+
Sbjct: 9   VCLSIACQDVTSAIHQRKSSKNLEHS 34


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 620 GPFRQAISICVCSSTEYLLFSGPAHSPQLPRPTSIP 513
           G +  A+S  +C++T   LF   A +  +P  TS+P
Sbjct: 225 GNYENAVSH-ICNATNKQLFQLVAWAKHIPHFTSLP 259


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 620 GPFRQAISICVCSSTEYLLFSGPAHSPQLPRPTSIP 513
           G +  A+S  +C++T   LF   A +  +P  TS+P
Sbjct: 225 GNYENAVSH-ICNATNKQLFQLVAWAKHIPHFTSLP 259


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 533 VIGENGQVLKTINTLLMNIHKWKLL 607
           V+ EN       NTL + IHKWK L
Sbjct: 22  VVRENSSGKNLTNTLNV-IHKWKYL 45


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
 Frame = -2

Query: 678 DTWFPKSTG*TLTSWLFRTGTIPASNFHLCMFINRVFIVFRTCPFSPITKTYLH--TTIL 505
           D WF  ST   +  W F    +   +  L    +R+F++ R  P   + K +    TT L
Sbjct: 56  DPWFAGSTNIGINKWRFLLQCLEDLDCSLRKLNSRLFVI-RGQPADALPKLFKEWGTTNL 114

Query: 504 DF 499
            F
Sbjct: 115 TF 116


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 449 HIQSNHHPRKQIPVLDHN 396
           H+Q++HH  +   V DH+
Sbjct: 143 HLQNHHHHLQSTAVQDHH 160


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,778
Number of Sequences: 438
Number of extensions: 4849
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)