Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30079
         (872 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak...    29   3.1  
At5g16210.1 68418.m01894 HEAT repeat-containing protein contains...    29   4.1  

>At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak
           similarity to Pfam domain PF01612: 3'-5' exonuclease
          Length = 263

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 325 FRLHRCPPGEGCSAGDSC 272
           + L RC PGEGC+  D C
Sbjct: 167 WELFRCSPGEGCNCPDMC 184


>At5g16210.1 68418.m01894 HEAT repeat-containing protein contains
           Pfam profile PF02985: HEAT repeat
          Length = 1180

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -3

Query: 789 GSAGQLSICNKGVFQKARQLSRILLNPLIG---ATNLGSLSVQNPVI 658
           G AG +S  N G  +  +++S  LL+P  G     +LGS+   +P I
Sbjct: 381 GEAGNISYANNGTLENQKEVSNYLLSPSNGNFSPRDLGSILKVDPGI 427


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,779,473
Number of Sequences: 28952
Number of extensions: 302259
Number of successful extensions: 759
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2048424000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)