Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30077
(849 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0318 - 12292969-12293222,12293305-12293898,12297102-122974... 31 1.5
07_03_0002 - 12236436-12237130,12237603-12237750 30 2.7
08_01_0701 + 6200351-6200470,6200879-6201104,6201502-6201747,620... 29 3.5
10_08_0526 + 18547154-18547197,18547320-18547467,18547558-185476... 29 6.2
05_03_0194 + 9547626-9547715,9549235-9549311,9549493-9549564,954... 29 6.2
03_05_0541 + 25381403-25382077,25382555-25383904,25386267-253864... 29 6.2
08_02_0154 - 13324384-13325351,13326306-13326502,13326695-133272... 28 8.2
08_02_0151 - 13287964-13288661,13289616-13289812,13290005-132905... 28 8.2
08_02_0146 - 13195691-13196658,13197613-13197809,13198002-131984... 28 8.2
07_03_1336 - 25868238-25868284,25868731-25869079 28 8.2
06_03_0033 + 15719864-15720049,15720139-15720601,15720638-157212... 28 8.2
02_03_0034 - 14142518-14142923,14142935-14143269,14143976-141440... 28 8.2
01_04_0137 + 16522157-16522601,16522658-16522712,16523655-165238... 28 8.2
>05_03_0318 -
12292969-12293222,12293305-12293898,12297102-12297415,
12297712-12297893,12297960-12298187,12298234-12298698,
12299393-12299443
Length = 695
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 588 SCPNKQWNGPSFTKGLGLPRPPRTGKLPGSPGTWNASGS 704
S QWN P + G +PPR+ +P SP W +S S
Sbjct: 637 SASEDQWNTPHDIQW-GDNQPPRSSGVPPSPSGWRSSSS 674
>07_03_0002 - 12236436-12237130,12237603-12237750
Length = 280
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +3
Query: 588 SCPNKQWNGPSFTK-GLGLPRPPRTGKLPGSPGTWNASGS 704
S QW P + G +PPR+ +P SPG W +S S
Sbjct: 178 SASEDQWRAPHDIQWGDMSNQPPRSSGMPPSPGEWCSSSS 217
>08_01_0701 +
6200351-6200470,6200879-6201104,6201502-6201747,
6201818-6201868,6202231-6202491,6202587-6202639,
6202705-6202819,6202985-6203239,6203773-6204827
Length = 793
Score = 29.5 bits (63), Expect = 3.5
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 71 TIFIFLSLFHFCASFHYENEIHDRSSL 151
T FI + ++HFC YE E+H + S+
Sbjct: 507 TCFIIMYVWHFCTVKRYEFEMHSKVSM 533
>10_08_0526 +
18547154-18547197,18547320-18547467,18547558-18547604,
18548216-18548270,18548365-18548403,18548517-18548688,
18549135-18549201,18549378-18549434,18549637-18549873,
18551549-18551629,18551803-18551935
Length = 359
Score = 28.7 bits (61), Expect = 6.2
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Frame = +3
Query: 153 LALACGAHASGWAGPPANIALSQDGRNILDTPEVHRLVPHTFPLFSRLRKITPT-----Q 317
L ++ G+H W GP ++L I D P+ L+ ++ + R+R + P +
Sbjct: 167 LTVSTGSHKHKWMGPAIRMSLPSFSGQIEDHPD---LLKYSCQVECRVRPVRPAKIWRPR 223
Query: 318 MTTDHTTLDGTMKSTGNKL 374
+T DG + S G+++
Sbjct: 224 ITEPQECPDGKISSKGSEV 242
>05_03_0194 +
9547626-9547715,9549235-9549311,9549493-9549564,
9549648-9549719,9550047-9550118,9550199-9550225,
9550226-9550297,9550382-9550453,9550897-9550968,
9551047-9551121,9551226-9551297,9551384-9551449,
9551544-9551609,9551683-9551727,9551822-9551886,
9551971-9552350,9552419-9552545,9552688-9552846,
9552929-9553047,9553182-9553392,9553582-9553762,
9553845-9553995,9554086-9554448
Length = 901
Score = 28.7 bits (61), Expect = 6.2
Identities = 20/38 (52%), Positives = 23/38 (60%)
Frame = +2
Query: 695 FRFNQLIGTGGLPSWAIPGCPRLTKLGLNNQDLAQTIG 808
F +NQL TGGLPSWA +L L NN +L TIG
Sbjct: 282 FSYNQL--TGGLPSWATQNNFQL-NLVANNFELG-TIG 315
>03_05_0541 +
25381403-25382077,25382555-25383904,25386267-25386402,
25386642-25387126
Length = 881
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +2
Query: 215 VSRWTQYSGHTRSPQARAAHISALQQASKNNPNPNDDGSYDPRW 346
V RWT+Y+ RSP + +S + + + + +DG W
Sbjct: 441 VKRWTKYAME-RSPDKKIDEVSKVNEPKEEQKSGAEDGEQSQTW 483
>08_02_0154 -
13324384-13325351,13326306-13326502,13326695-13327274,
13328324-13328446,13328803-13329130
Length = 731
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 685 LGMLPVQPINWNRRPPFLGNSGLPPVNQARLKQ 783
LG L + PI+W R+ G PP+ +L+Q
Sbjct: 337 LGALSLAPISWRRKQRCPGTLVKPPIRAKKLEQ 369
>08_02_0151 -
13287964-13288661,13289616-13289812,13290005-13290523,
13290912-13291114
Length = 538
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 685 LGMLPVQPINWNRRPPFLGNSGLPPVNQARLKQ 783
LG L + PI+W R+ G PP+ +L+Q
Sbjct: 234 LGALSLAPISWRRKQRCPGTLVKPPIRAKKLEQ 266
>08_02_0146 -
13195691-13196658,13197613-13197809,13198002-13198479,
13199660-13199782,13200139-13200466
Length = 697
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 685 LGMLPVQPINWNRRPPFLGNSGLPPVNQARLKQ 783
LG L + PI+W R+ G PP+ +L+Q
Sbjct: 303 LGALSLAPISWRRKQRCPGTLVKPPIRAKKLEQ 335
>07_03_1336 - 25868238-25868284,25868731-25869079
Length = 131
Score = 28.3 bits (60), Expect = 8.2
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +3
Query: 135 MIVVACLALACGAHASGWAGPPANIALSQDGRNI 236
++VVA LALACGA + A PA S G +I
Sbjct: 8 VVVVAVLALACGAASQSPAPAPAAGPASDCGSSI 41
>06_03_0033 +
15719864-15720049,15720139-15720601,15720638-15721254,
15721300-15721869,15723625-15724140
Length = 783
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 588 SCPNKQWNGPSFTKGLGLPRPPRTGKLPGSPGTWNASGS 704
S +W+ P G +PPR+ +P SP W +S S
Sbjct: 674 SASEDRWHAPHDIHW-GENQPPRSSDVPPSPSEWRSSSS 711
>02_03_0034 -
14142518-14142923,14142935-14143269,14143976-14144068,
14144704-14145674,14145714-14145812,14146011-14146488,
14146717-14146929
Length = 864
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 588 SCPNKQWNGPSFTKGLGLPRPPRTGKLPGSPGTWNASGS 704
S +W+ P + G +PPR+ +P SP W +S S
Sbjct: 755 SASEDRWHAPHDIQW-GDNQPPRSSGVPPSPSEWRSSSS 792
>01_04_0137 +
16522157-16522601,16522658-16522712,16523655-16523807,
16525750-16525944,16526096-16526618,16526712-16527103,
16527201-16527270,16527471-16527506,16527818-16527892
Length = 647
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 588 SCPNKQWNGPSFTKGLGLPRPPRTGKLPGSPGTWNASGS 704
S +W+ P + G +PPR+ +P SP W +S S
Sbjct: 519 SASEDRWHAPHDIQW-GDNQPPRSSGVPPSPSEWRSSSS 556
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,499,533
Number of Sequences: 37544
Number of extensions: 561098
Number of successful extensions: 1807
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1807
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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