Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30077
(849 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D88587-1|BAA32277.1| 299|Homo sapiens Hakata antigen protein. 35 0.43
CR456808-1|CAG33089.1| 299|Homo sapiens FCN3 protein. 35 0.43
BC020731-1|AAH20731.1| 288|Homo sapiens ficolin (collagen/fibri... 35 0.43
AY756173-1|AAU85296.1| 299|Homo sapiens ficolin (collagen/fibri... 35 0.43
AY358283-1|AAQ88650.1| 288|Homo sapiens NL3 protein. 35 0.43
AL663123-2|CAI14775.1| 288|Homo sapiens ficolin (collagen/fibri... 35 0.43
AL663123-1|CAI14774.1| 299|Homo sapiens ficolin (collagen/fibri... 35 0.43
AK075140-1|BAC11429.1| 288|Homo sapiens protein ( Homo sapiens ... 35 0.43
AB014519-1|BAA31594.2| 1428|Homo sapiens KIAA0619 protein protein. 33 1.7
BT007420-1|AAP36088.1| 655|Homo sapiens tumor necrosis factor r... 31 5.3
BC021572-1|AAH21572.1| 655|Homo sapiens tumor necrosis factor r... 31 5.3
BC017730-1|AAH17730.1| 655|Homo sapiens tumor necrosis factor r... 31 5.3
AY358304-1|AAQ88671.1| 655|Homo sapiens DR6-TNFR protein. 31 5.3
AL096801-1|CAB75692.1| 655|Homo sapiens tumor necrosis factor r... 31 5.3
AF068868-1|AAC34583.1| 655|Homo sapiens TNFR-related death rece... 31 5.3
X16711-1|CAA34683.1| 1160|Homo sapiens COL2A1 protein. 31 7.0
X16468-1|CAA34488.1| 1418|Homo sapiens protein ( Human mRNA for ... 31 7.0
L10347-1|AAC41772.1| 1487|Homo sapiens alpha-1 type II collagen ... 31 7.0
BC116449-1|AAI16450.1| 1487|Homo sapiens collagen, type II, alph... 31 7.0
BC101149-1|AAI01150.1| 128|Homo sapiens keratin associated prot... 31 7.0
BC101148-1|AAI01149.1| 128|Homo sapiens keratin associated prot... 31 7.0
BC101147-1|AAI01148.1| 128|Homo sapiens keratin associated prot... 31 7.0
BC063625-1|AAH63625.1| 128|Homo sapiens KRTAP2-4 protein protein. 31 7.0
AJ406930-1|CAC27569.1| 128|Homo sapiens keratin associated prot... 31 7.0
AJ302536-1|CAC27564.1| 85|Homo sapiens keratin associated prot... 31 7.0
AJ296345-1|CAC24555.1| 96|Homo sapiens keratin associated prot... 31 7.0
D87437-1|BAA13381.2| 1122|Homo sapiens KIAA0250 protein. 30 9.2
DQ009660-1|AAY26234.1| 1836|Homo sapiens expressed in synovial l... 30 9.2
BC146783-1|AAI46784.1| 1773|Homo sapiens FNDC1 protein protein. 30 9.2
BC052565-1|AAH52565.1| 839|Homo sapiens SMG7 protein protein. 30 9.2
BC036381-1|AAH36381.1| 1178|Homo sapiens SMG7 protein protein. 30 9.2
AY386363-1|AAR25620.1| 802|Homo sapiens breast cancer-associate... 30 9.2
AL590551-1|CAH71650.1| 600|Homo sapiens fibronectin type III do... 30 9.2
AL449223-4|CAI16627.1| 1137|Homo sapiens Smg-7 homolog, nonsense... 30 9.2
AL137800-13|CAI19486.1| 1137|Homo sapiens Smg-7 homolog, nonsens... 30 9.2
AL137800-3|CAI19478.1| 1099|Homo sapiens Smg-7 homolog, nonsense... 30 9.2
AB085674-2|BAC53622.1| 1071|Homo sapiens SMG-7 transcript varian... 30 9.2
AB085674-1|BAC53621.1| 1137|Homo sapiens SMG-7 protein. 30 9.2
AB058769-1|BAB47495.2| 1783|Homo sapiens KIAA1866 protein protein. 30 9.2
>D88587-1|BAA32277.1| 299|Homo sapiens Hakata antigen protein.
Length = 299
Score = 34.7 bits (76), Expect = 0.43
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -3
Query: 745 NCPG-REASGSN*LVEPEAFQVPGEPGSFPVLGGRGNPSPLVKLGP 611
+CPG RE S ++ P PG PG G +G P P K+GP
Sbjct: 28 SCPGPRELEASKVVLLPSCPGAPGSPGEKGAPGPQGPPGPPGKMGP 73
>CR456808-1|CAG33089.1| 299|Homo sapiens FCN3 protein.
Length = 299
Score = 34.7 bits (76), Expect = 0.43
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -3
Query: 745 NCPG-REASGSN*LVEPEAFQVPGEPGSFPVLGGRGNPSPLVKLGP 611
+CPG RE S ++ P PG PG G +G P P K+GP
Sbjct: 28 SCPGPRELEASKVVLLPSCPGAPGSPGEKGAPGPQGPPGPPGKMGP 73
>BC020731-1|AAH20731.1| 288|Homo sapiens ficolin
(collagen/fibrinogen domain containing) 3 (Hakata
antigen) protein.
Length = 288
Score = 34.7 bits (76), Expect = 0.43
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -3
Query: 745 NCPG-REASGSN*LVEPEAFQVPGEPGSFPVLGGRGNPSPLVKLGP 611
+CPG RE S ++ P PG PG G +G P P K+GP
Sbjct: 28 SCPGPRELEASKVVLLPSCPGAPGSPGEKGAPGPQGPPGPPGKMGP 73
>AY756173-1|AAU85296.1| 299|Homo sapiens ficolin
(collagen/fibrinogen domain containing) 3 (Hakata
antigen) protein.
Length = 299
Score = 34.7 bits (76), Expect = 0.43
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -3
Query: 745 NCPG-REASGSN*LVEPEAFQVPGEPGSFPVLGGRGNPSPLVKLGP 611
+CPG RE S ++ P PG PG G +G P P K+GP
Sbjct: 28 SCPGPRELEASKVVLLPSCPGAPGSPGEKGAPGPQGPPGPPGKMGP 73
>AY358283-1|AAQ88650.1| 288|Homo sapiens NL3 protein.
Length = 288
Score = 34.7 bits (76), Expect = 0.43
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -3
Query: 745 NCPG-REASGSN*LVEPEAFQVPGEPGSFPVLGGRGNPSPLVKLGP 611
+CPG RE S ++ P PG PG G +G P P K+GP
Sbjct: 28 SCPGPRELEASKVVLLPSCPGAPGSPGEKGAPGPQGPPGPPGKMGP 73
>AL663123-2|CAI14775.1| 288|Homo sapiens ficolin
(collagen/fibrinogen domain containing) 35A) pseudogene
protein.
Length = 288
Score = 34.7 bits (76), Expect = 0.43
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -3
Query: 745 NCPG-REASGSN*LVEPEAFQVPGEPGSFPVLGGRGNPSPLVKLGP 611
+CPG RE S ++ P PG PG G +G P P K+GP
Sbjct: 28 SCPGPRELEASKVVLLPSCPGAPGSPGEKGAPGPQGPPGPPGKMGP 73
>AL663123-1|CAI14774.1| 299|Homo sapiens ficolin
(collagen/fibrinogen domain containing) 3Dent disease)
protein.
Length = 299
Score = 34.7 bits (76), Expect = 0.43
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -3
Query: 745 NCPG-REASGSN*LVEPEAFQVPGEPGSFPVLGGRGNPSPLVKLGP 611
+CPG RE S ++ P PG PG G +G P P K+GP
Sbjct: 28 SCPGPRELEASKVVLLPSCPGAPGSPGEKGAPGPQGPPGPPGKMGP 73
>AK075140-1|BAC11429.1| 288|Homo sapiens protein ( Homo sapiens
cDNA FLJ90659 fis, clone PLACE1004816, highly similar to
Ficolin 3 precursor. ).
Length = 288
Score = 34.7 bits (76), Expect = 0.43
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -3
Query: 745 NCPG-REASGSN*LVEPEAFQVPGEPGSFPVLGGRGNPSPLVKLGP 611
+CPG RE S ++ P PG PG G +G P P K+GP
Sbjct: 28 SCPGPRELEASKVVLLPSCPGAPGSPGEKGAPGPQGPPGPPGKMGP 73
>AB014519-1|BAA31594.2| 1428|Homo sapiens KIAA0619 protein protein.
Length = 1428
Score = 32.7 bits (71), Expect = 1.7
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 624 TKGLGLPRPPRTGKLPGSPGTWNASGS 704
+ G G+ RPP TGK+PG+P T G+
Sbjct: 36 SSGGGMSRPPPTGKMPGAPETAPGDGA 62
>BT007420-1|AAP36088.1| 655|Homo sapiens tumor necrosis factor
receptor superfamily, member 21 protein.
Length = 655
Score = 31.1 bits (67), Expect = 5.3
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +1
Query: 382 MERCSRSCLERCPRPLMERCPCCCSFMER---CPSSFLECCRICSP 510
+E+C C + CP P++E+ P C + +R CP + C+P
Sbjct: 103 IEKC-HDCSQPCPWPMIEKLP-CAALTDRECTCPPGMFQSNATCAP 146
>BC021572-1|AAH21572.1| 655|Homo sapiens tumor necrosis factor
receptor superfamily, member 21 protein.
Length = 655
Score = 31.1 bits (67), Expect = 5.3
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +1
Query: 382 MERCSRSCLERCPRPLMERCPCCCSFMER---CPSSFLECCRICSP 510
+E+C C + CP P++E+ P C + +R CP + C+P
Sbjct: 103 IEKC-HDCSQPCPWPMIEKLP-CAALTDRECTCPPGMFQSNATCAP 146
>BC017730-1|AAH17730.1| 655|Homo sapiens tumor necrosis factor
receptor superfamily, member 21 protein.
Length = 655
Score = 31.1 bits (67), Expect = 5.3
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +1
Query: 382 MERCSRSCLERCPRPLMERCPCCCSFMER---CPSSFLECCRICSP 510
+E+C C + CP P++E+ P C + +R CP + C+P
Sbjct: 103 IEKC-HDCSQPCPWPMIEKLP-CAALTDRECTCPPGMFQSNATCAP 146
>AY358304-1|AAQ88671.1| 655|Homo sapiens DR6-TNFR protein.
Length = 655
Score = 31.1 bits (67), Expect = 5.3
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +1
Query: 382 MERCSRSCLERCPRPLMERCPCCCSFMER---CPSSFLECCRICSP 510
+E+C C + CP P++E+ P C + +R CP + C+P
Sbjct: 103 IEKC-HDCSQPCPWPMIEKLP-CAALTDRECTCPPGMFQSNATCAP 146
>AL096801-1|CAB75692.1| 655|Homo sapiens tumor necrosis factor
receptor superfamily, member 21 protein.
Length = 655
Score = 31.1 bits (67), Expect = 5.3
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +1
Query: 382 MERCSRSCLERCPRPLMERCPCCCSFMER---CPSSFLECCRICSP 510
+E+C C + CP P++E+ P C + +R CP + C+P
Sbjct: 103 IEKC-HDCSQPCPWPMIEKLP-CAALTDRECTCPPGMFQSNATCAP 146
>AF068868-1|AAC34583.1| 655|Homo sapiens TNFR-related death
receptor-6 protein.
Length = 655
Score = 31.1 bits (67), Expect = 5.3
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +1
Query: 382 MERCSRSCLERCPRPLMERCPCCCSFMER---CPSSFLECCRICSP 510
+E+C C + CP P++E+ P C + +R CP + C+P
Sbjct: 103 IEKC-HDCSQPCPWPMIEKLP-CAALTDRECTCPPGMFQSNATCAP 146
>X16711-1|CAA34683.1| 1160|Homo sapiens COL2A1 protein.
Length = 1160
Score = 30.7 bits (66), Expect = 7.0
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +3
Query: 612 GPSFTKGL-GLPRPPRTGKLPGSPGTWNASGSTN*LEP--EASLPGQFRVAPG 761
GPS +GL G P PP G PG G +G+ + P E PG+ R +PG
Sbjct: 591 GPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGE-RGSPG 642
>X16468-1|CAA34488.1| 1418|Homo sapiens protein ( Human mRNA for
alpha-1 type II collagen. ).
Length = 1418
Score = 30.7 bits (66), Expect = 7.0
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +3
Query: 612 GPSFTKGL-GLPRPPRTGKLPGSPGTWNASGSTN*LEP--EASLPGQFRVAPG 761
GPS +GL G P PP G PG G +G+ + P E PG+ R +PG
Sbjct: 591 GPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGE-RGSPG 642
>L10347-1|AAC41772.1| 1487|Homo sapiens alpha-1 type II collagen
protein.
Length = 1487
Score = 30.7 bits (66), Expect = 7.0
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +3
Query: 612 GPSFTKGL-GLPRPPRTGKLPGSPGTWNASGSTN*LEP--EASLPGQFRVAPG 761
GPS +GL G P PP G PG G +G+ + P E PG+ R +PG
Sbjct: 660 GPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGE-RGSPG 711
>BC116449-1|AAI16450.1| 1487|Homo sapiens collagen, type II, alpha 1
(primary osteoarthritis, spondyloepiphyseal dysplasi
protein.
Length = 1487
Score = 30.7 bits (66), Expect = 7.0
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +3
Query: 612 GPSFTKGL-GLPRPPRTGKLPGSPGTWNASGSTN*LEP--EASLPGQFRVAPG 761
GPS +GL G P PP G PG G +G+ + P E PG+ R +PG
Sbjct: 660 GPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGE-RGSPG 711
>BC101149-1|AAI01150.1| 128|Homo sapiens keratin associated protein
2-4 protein.
Length = 128
Score = 30.7 bits (66), Expect = 7.0
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Frame = +1
Query: 400 SCLERCPRPLMERC--PCCCSFMERCPSSFLE-CCR--ICSP 510
+C+ RC RP+ E C P CC P S E CCR C P
Sbjct: 45 TCVPRCTRPICEPCRRPVCCD-----PCSLQEGCCRPITCCP 81
>BC101148-1|AAI01149.1| 128|Homo sapiens keratin associated protein
2-4 protein.
Length = 128
Score = 30.7 bits (66), Expect = 7.0
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Frame = +1
Query: 400 SCLERCPRPLMERC--PCCCSFMERCPSSFLE-CCR--ICSP 510
+C+ RC RP+ E C P CC P S E CCR C P
Sbjct: 45 TCVPRCTRPICEPCRRPVCCD-----PCSLQEGCCRPITCCP 81
>BC101147-1|AAI01148.1| 128|Homo sapiens keratin associated protein
2-4 protein.
Length = 128
Score = 30.7 bits (66), Expect = 7.0
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Frame = +1
Query: 400 SCLERCPRPLMERC--PCCCSFMERCPSSFLE-CCR--ICSP 510
+C+ RC RP+ E C P CC P S E CCR C P
Sbjct: 45 TCVPRCTRPICEPCRRPVCCD-----PCSLQEGCCRPITCCP 81
>BC063625-1|AAH63625.1| 128|Homo sapiens KRTAP2-4 protein protein.
Length = 128
Score = 30.7 bits (66), Expect = 7.0
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Frame = +1
Query: 400 SCLERCPRPLMERC--PCCCSFMERCPSSFLE-CCR--ICSP 510
+C+ RC RP+ E C P CC P S E CCR C P
Sbjct: 45 TCVPRCTRPICEPCRRPVCCD-----PCSLQEGCCRPITCCP 81
>AJ406930-1|CAC27569.1| 128|Homo sapiens keratin associated protein
2.4 protein.
Length = 128
Score = 30.7 bits (66), Expect = 7.0
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Frame = +1
Query: 400 SCLERCPRPLMERC--PCCCSFMERCPSSFLE-CCR--ICSP 510
+C+ RC RP+ E C P CC P S E CCR C P
Sbjct: 45 TCVPRCTRPICEPCRRPVCCD-----PCSLQEGCCRPITCCP 81
>AJ302536-1|CAC27564.1| 85|Homo sapiens keratin associated protein
KAP2.2 protein.
Length = 85
Score = 30.7 bits (66), Expect = 7.0
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Frame = +1
Query: 400 SCLERCPRPLMERC--PCCCSFMERCPSSFLE-CCR--ICSP 510
+C+ RC RP+ E C P CC P S E CCR C P
Sbjct: 2 TCVPRCTRPICEPCRRPVCCD-----PCSLQEGCCRPITCCP 38
>AJ296345-1|CAC24555.1| 96|Homo sapiens keratin associated protein
protein.
Length = 96
Score = 30.7 bits (66), Expect = 7.0
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Frame = +1
Query: 400 SCLERCPRPLMERC--PCCCSFMERCPSSFLE-CCR--ICSP 510
+C+ RC RP+ E C P CC P S E CCR C P
Sbjct: 13 TCVPRCTRPICEPCRRPVCCD-----PCSLQEGCCRPITCCP 49
>D87437-1|BAA13381.2| 1122|Homo sapiens KIAA0250 protein.
Length = 1122
Score = 30.3 bits (65), Expect = 9.2
Identities = 17/61 (27%), Positives = 23/61 (37%)
Frame = -2
Query: 791 SPDCLSRAWLTGGNPELPRKGGLRFQLIG*TGSIPSSW*TGKLSSPWWAGQSQSLGEAGA 612
+PD R + P GG + T S SSW S W G S+ ++ A
Sbjct: 1019 TPDNRDRRTADRWKTDKPAMGGFGIDYLSATSSSESSWHQASTPSGTWTGHGPSMEDSSA 1078
Query: 611 V 609
V
Sbjct: 1079 V 1079
>DQ009660-1|AAY26234.1| 1836|Homo sapiens expressed in synovial lining
protein protein.
Length = 1836
Score = 30.3 bits (65), Expect = 9.2
Identities = 18/50 (36%), Positives = 21/50 (42%)
Frame = +3
Query: 192 GPPANIALSQDGRNILDTPEVHRLVPHTFPLFSRLRKITPTQMTTDHTTL 341
G P I L DGR I+D + P PLF + R TP D L
Sbjct: 1326 GNPLRIKLGGDGRTIVDLEGTPVVSPDGLPLFGQGRHGTPLANAQDKPIL 1375
>BC146783-1|AAI46784.1| 1773|Homo sapiens FNDC1 protein protein.
Length = 1773
Score = 30.3 bits (65), Expect = 9.2
Identities = 18/50 (36%), Positives = 21/50 (42%)
Frame = +3
Query: 192 GPPANIALSQDGRNILDTPEVHRLVPHTFPLFSRLRKITPTQMTTDHTTL 341
G P I L DGR I+D + P PLF + R TP D L
Sbjct: 1263 GNPLRIKLGGDGRTIVDLEGTPVVSPDGLPLFGQGRHGTPLANAQDKPIL 1312
>BC052565-1|AAH52565.1| 839|Homo sapiens SMG7 protein protein.
Length = 839
Score = 30.3 bits (65), Expect = 9.2
Identities = 17/61 (27%), Positives = 23/61 (37%)
Frame = -2
Query: 791 SPDCLSRAWLTGGNPELPRKGGLRFQLIG*TGSIPSSW*TGKLSSPWWAGQSQSLGEAGA 612
+PD R + P GG + T S SSW S W G S+ ++ A
Sbjct: 736 TPDNRDRRTADRWKTDKPAMGGFGIDYLSATSSSESSWHQASTPSGTWTGHGPSMEDSSA 795
Query: 611 V 609
V
Sbjct: 796 V 796
>BC036381-1|AAH36381.1| 1178|Homo sapiens SMG7 protein protein.
Length = 1178
Score = 30.3 bits (65), Expect = 9.2
Identities = 17/61 (27%), Positives = 23/61 (37%)
Frame = -2
Query: 791 SPDCLSRAWLTGGNPELPRKGGLRFQLIG*TGSIPSSW*TGKLSSPWWAGQSQSLGEAGA 612
+PD R + P GG + T S SSW S W G S+ ++ A
Sbjct: 1038 TPDNRDRRTADRWKTDKPAMGGFGIDYLSATSSSESSWHQASTPSGTWTGHGPSMEDSSA 1097
Query: 611 V 609
V
Sbjct: 1098 V 1098
>AY386363-1|AAR25620.1| 802|Homo sapiens breast cancer-associated
antigen SGA-56M protein.
Length = 802
Score = 30.3 bits (65), Expect = 9.2
Identities = 17/61 (27%), Positives = 23/61 (37%)
Frame = -2
Query: 791 SPDCLSRAWLTGGNPELPRKGGLRFQLIG*TGSIPSSW*TGKLSSPWWAGQSQSLGEAGA 612
+PD R + P GG + T S SSW S W G S+ ++ A
Sbjct: 699 TPDNRDRRTADRWKTDKPAMGGFGIDYLSATSSSESSWHQASTPSGTWTGHGPSMEDSSA 758
Query: 611 V 609
V
Sbjct: 759 V 759
>AL590551-1|CAH71650.1| 600|Homo sapiens fibronectin type III
domain containing 1 protein.
Length = 600
Score = 30.3 bits (65), Expect = 9.2
Identities = 18/50 (36%), Positives = 21/50 (42%)
Frame = +3
Query: 192 GPPANIALSQDGRNILDTPEVHRLVPHTFPLFSRLRKITPTQMTTDHTTL 341
G P I L DGR I+D + P PLF + R TP D L
Sbjct: 84 GNPLRIKLGGDGRTIVDLEGTPVVSPDGLPLFGQGRHGTPLANAQDKPIL 133
>AL449223-4|CAI16627.1| 1137|Homo sapiens Smg-7 homolog, nonsense
mediated mRNA decay factor (C. elegans) protein.
Length = 1137
Score = 30.3 bits (65), Expect = 9.2
Identities = 17/61 (27%), Positives = 23/61 (37%)
Frame = -2
Query: 791 SPDCLSRAWLTGGNPELPRKGGLRFQLIG*TGSIPSSW*TGKLSSPWWAGQSQSLGEAGA 612
+PD R + P GG + T S SSW S W G S+ ++ A
Sbjct: 1034 TPDNRDRRTADRWKTDKPAMGGFGIDYLSATSSSESSWHQASTPSGTWTGHGPSMEDSSA 1093
Query: 611 V 609
V
Sbjct: 1094 V 1094
>AL137800-13|CAI19486.1| 1137|Homo sapiens Smg-7 homolog, nonsense
mediated mRNA decay factor (C. elegans) protein.
Length = 1137
Score = 30.3 bits (65), Expect = 9.2
Identities = 17/61 (27%), Positives = 23/61 (37%)
Frame = -2
Query: 791 SPDCLSRAWLTGGNPELPRKGGLRFQLIG*TGSIPSSW*TGKLSSPWWAGQSQSLGEAGA 612
+PD R + P GG + T S SSW S W G S+ ++ A
Sbjct: 1034 TPDNRDRRTADRWKTDKPAMGGFGIDYLSATSSSESSWHQASTPSGTWTGHGPSMEDSSA 1093
Query: 611 V 609
V
Sbjct: 1094 V 1094
>AL137800-3|CAI19478.1| 1099|Homo sapiens Smg-7 homolog, nonsense
mediated mRNA decay factor (C. elegans) protein.
Length = 1099
Score = 30.3 bits (65), Expect = 9.2
Identities = 17/61 (27%), Positives = 23/61 (37%)
Frame = -2
Query: 791 SPDCLSRAWLTGGNPELPRKGGLRFQLIG*TGSIPSSW*TGKLSSPWWAGQSQSLGEAGA 612
+PD R + P GG + T S SSW S W G S+ ++ A
Sbjct: 996 TPDNRDRRTADRWKTDKPAMGGFGIDYLSATSSSESSWHQASTPSGTWTGHGPSMEDSSA 1055
Query: 611 V 609
V
Sbjct: 1056 V 1056
>AB085674-2|BAC53622.1| 1071|Homo sapiens SMG-7 transcript variant 2
protein.
Length = 1071
Score = 30.3 bits (65), Expect = 9.2
Identities = 17/61 (27%), Positives = 23/61 (37%)
Frame = -2
Query: 791 SPDCLSRAWLTGGNPELPRKGGLRFQLIG*TGSIPSSW*TGKLSSPWWAGQSQSLGEAGA 612
+PD R + P GG + T S SSW S W G S+ ++ A
Sbjct: 968 TPDNRDRRTADRWKTDKPAMGGFGIDYLSATSSSESSWHQASTPSGTWTGHGPSMEDSSA 1027
Query: 611 V 609
V
Sbjct: 1028 V 1028
>AB085674-1|BAC53621.1| 1137|Homo sapiens SMG-7 protein.
Length = 1137
Score = 30.3 bits (65), Expect = 9.2
Identities = 17/61 (27%), Positives = 23/61 (37%)
Frame = -2
Query: 791 SPDCLSRAWLTGGNPELPRKGGLRFQLIG*TGSIPSSW*TGKLSSPWWAGQSQSLGEAGA 612
+PD R + P GG + T S SSW S W G S+ ++ A
Sbjct: 1034 TPDNRDRRTADRWKTDKPAMGGFGIDYLSATSSSESSWHQASTPSGTWTGHGPSMEDSSA 1093
Query: 611 V 609
V
Sbjct: 1094 V 1094
>AB058769-1|BAB47495.2| 1783|Homo sapiens KIAA1866 protein protein.
Length = 1783
Score = 30.3 bits (65), Expect = 9.2
Identities = 18/50 (36%), Positives = 21/50 (42%)
Frame = +3
Query: 192 GPPANIALSQDGRNILDTPEVHRLVPHTFPLFSRLRKITPTQMTTDHTTL 341
G P I L DGR I+D + P PLF + R TP D L
Sbjct: 1273 GNPLRIKLGGDGRTIVDLEGTPVVSPDGLPLFGQGRHGTPLANAQDKPIL 1322
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,642,841
Number of Sequences: 237096
Number of extensions: 3231172
Number of successful extensions: 15557
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 12528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15475
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10761200974
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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