Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30077
         (849 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr...    31   0.78 
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr...    31   0.78 
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p...    31   0.78 
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p...    31   0.78 
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane...    31   0.78 
AF535160-1|AAN33048.1|  468|Caenorhabditis elegans UNC-34 protein.     31   1.4  
AC025722-5|AAO12397.1|  454|Caenorhabditis elegans Uncoordinated...    31   1.4  
AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical...    29   3.2  
Z72504-6|CAA96604.2|  906|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U51997-1|AAG24067.1|  572|Caenorhabditis elegans Activated in bl...    29   5.5  
AF016442-9|AAB65921.1|  714|Caenorhabditis elegans Hypothetical ...    29   5.5  
Z78064-1|CAB01509.1|  313|Caenorhabditis elegans Hypothetical pr...    28   7.3  
L15419-1|AAA17726.1|  308|Caenorhabditis elegans col-40 collagen...    28   7.3  
AL034393-6|CAA22321.1|  507|Caenorhabditis elegans Hypothetical ...    28   7.3  
AC024811-5|AAF60775.1|  285|Caenorhabditis elegans Collagen prot...    28   7.3  
Z83129-9|CAB63325.2|  100|Caenorhabditis elegans Hypothetical pr...    28   9.6  
AC006665-5|AAF39907.1|  630|Caenorhabditis elegans Hypothetical ...    28   9.6  

>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
            K08E5.3b protein.
          Length = 3183

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 382  MERCSRSCLERC-PRPLMERCPCCCSFMERCPSSFLECCRICSPPVAETP 528
            +  CSR+ +  C   P   RC C   FM+R P S  +  R+C PP   +P
Sbjct: 1881 LNTCSRNAI--CYDEPRGYRCECKRGFMDRSPDS-SQRGRVCEPPPPPSP 1927


>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
            K08E5.3a protein.
          Length = 3767

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 382  MERCSRSCLERC-PRPLMERCPCCCSFMERCPSSFLECCRICSPPVAETP 528
            +  CSR+ +  C   P   RC C   FM+R P S  +  R+C PP   +P
Sbjct: 2465 LNTCSRNAI--CYDEPRGYRCECKRGFMDRSPDS-SQRGRVCEPPPPPSP 2511


>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
            protein K08E5.3b protein.
          Length = 3183

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 382  MERCSRSCLERC-PRPLMERCPCCCSFMERCPSSFLECCRICSPPVAETP 528
            +  CSR+ +  C   P   RC C   FM+R P S  +  R+C PP   +P
Sbjct: 1881 LNTCSRNAI--CYDEPRGYRCECKRGFMDRSPDS-SQRGRVCEPPPPPSP 1927


>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
            protein K08E5.3a protein.
          Length = 3767

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 382  MERCSRSCLERC-PRPLMERCPCCCSFMERCPSSFLECCRICSPPVAETP 528
            +  CSR+ +  C   P   RC C   FM+R P S  +  R+C PP   +P
Sbjct: 2465 LNTCSRNAI--CYDEPRGYRCECKRGFMDRSPDS-SQRGRVCEPPPPPSP 2511


>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
            adhesion receptorMUA-3 precursor protein.
          Length = 3767

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 382  MERCSRSCLERC-PRPLMERCPCCCSFMERCPSSFLECCRICSPPVAETP 528
            +  CSR+ +  C   P   RC C   FM+R P S  +  R+C PP   +P
Sbjct: 2465 LNTCSRNAI--CYDEPRGYRCECKRGFMDRSPDS-SQRGRVCEPPPPPSP 2511


>AF535160-1|AAN33048.1|  468|Caenorhabditis elegans UNC-34 protein.
          Length = 468

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
 Frame = +3

Query: 165 CGAHASGWAGPPANIALS-QDGRNILDTPEVHRLVPHTFPLFSR--LRKITPTQMTTDHT 335
           CG+   G  G  A    S  D    +D+P+ HR +P    LFS+      + + +T    
Sbjct: 350 CGSSNGGSVGSAAAKKWSVSDATKPMDSPKTHRKLPSASSLFSQEDSSSSSSSTLTPSKP 409

Query: 336 TLDGTMKSTGNKL 374
           T +GT  +  N L
Sbjct: 410 TTNGTSSAIPNDL 422


>AC025722-5|AAO12397.1|  454|Caenorhabditis elegans Uncoordinated
           protein 34, isoform a protein.
          Length = 454

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
 Frame = +3

Query: 165 CGAHASGWAGPPANIALS-QDGRNILDTPEVHRLVPHTFPLFSR--LRKITPTQMTTDHT 335
           CG+   G  G  A    S  D    +D+P+ HR +P    LFS+      + + +T    
Sbjct: 336 CGSSNGGSVGSAAAKKWSVSDATKPMDSPKTHRKLPSASSLFSQEDSSSSSSSTLTPSKP 395

Query: 336 TLDGTMKSTGNKL 374
           T +GT  +  N L
Sbjct: 396 TTNGTSSAIPNDL 408


>AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical
           protein Y51H7C.1 protein.
          Length = 448

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/32 (50%), Positives = 16/32 (50%)
 Frame = +3

Query: 612 GPSFTKGLGLPRPPRTGKLPGSPGTWNASGST 707
           GP    GLG P  P T   PG PGT   SG T
Sbjct: 50  GPGTPGGLGTPGGPGT---PGGPGTPETSGGT 78


>Z72504-6|CAA96604.2|  906|Caenorhabditis elegans Hypothetical
           protein C29E6.4 protein.
          Length = 906

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 117 ITKMKSMIVVACLALA-CGAHASGWAGPPANIALSQDGRNIL 239
           +  +KS +    L +  C AH  G  GPPA++ L  DG  +L
Sbjct: 728 LATVKSNVSAELLRIVDCTAHRVGGTGPPASVNLIADGCALL 769


>U51997-1|AAG24067.1|  572|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 2 protein.
          Length = 572

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = +1

Query: 382 MERCSRSCLERCPRPLMERCPCC---CSFMERCPSSFLECCRICSPPVA 519
           + +C + C  +C +P   +C  C   C   ++C     +C  +C+ P A
Sbjct: 216 VSQCQQQCAPQCQQPSAPQCQQCQSSCQQTQQCQQ---QCIPLCNQPSA 261


>AF016442-9|AAB65921.1|  714|Caenorhabditis elegans Hypothetical
           protein K12B6.8 protein.
          Length = 714

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
 Frame = +1

Query: 385 ERCSRSCLERCPRPLMER---CPCC 450
           ERC++S  E+C  PL+++   CP C
Sbjct: 673 ERCTKSIHEKCAAPLLQQSVMCPTC 697


>Z78064-1|CAB01509.1|  313|Caenorhabditis elegans Hypothetical
           protein F57B1.3 protein.
          Length = 313

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 20/54 (37%), Positives = 23/54 (42%)
 Frame = +3

Query: 615 PSFTKGLGLPRPPRTGKLPGSPGTWNASGSTN*LEPEASLPGQFRVAPG*PSSA 776
           P  T G  LP PP     PG  G   ++G+     P A  PGQ    PG P  A
Sbjct: 193 PGQTGGASLPGPPGPAGPPGPSGQPGSNGNAG--APGA--PGQVVDVPGTPGPA 242


>L15419-1|AAA17726.1|  308|Caenorhabditis elegans col-40 collagen
           protein.
          Length = 308

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 23/61 (37%), Positives = 27/61 (44%)
 Frame = +3

Query: 594 PNKQWNGPSFTKGLGLPRPPRTGKLPGSPGTWNASGSTN*LEPEASLPGQFRVAPG*PSS 773
           P +  N PS   G+G   PP      G+PGT  A G+     P A  PGQ    PG P  
Sbjct: 185 PGEDGNTPS-RGGVGEAGPPGPPGTSGNPGTDGAPGN-----PGA--PGQVTETPGTPGP 236

Query: 774 A 776
           A
Sbjct: 237 A 237


>AL034393-6|CAA22321.1|  507|Caenorhabditis elegans Hypothetical
           protein Y18D10A.8 protein.
          Length = 507

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = +1

Query: 691 MLPVQPINWNRRPPFLGNSGLPPVNQARLKQSGLSPNDWFPGNSSNKT 834
           M P+ P+  N   PFL +S +PP +Q  L+Q  L+     P N  NKT
Sbjct: 199 MNPLMPMPPN---PFLPHSMIPPDHQMFLRQRSLNKK---PNNLMNKT 240


>AC024811-5|AAF60775.1|  285|Caenorhabditis elegans Collagen protein
           48 protein.
          Length = 285

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/35 (40%), Positives = 15/35 (42%)
 Frame = +3

Query: 636 GLPRPPRTGKLPGSPGTWNASGSTN*LEPEASLPG 740
           G P PP     PGSPG   + GS     P    PG
Sbjct: 250 GPPGPPGQAGTPGSPGDAGSPGSCEHCPPARLAPG 284


>Z83129-9|CAB63325.2|  100|Caenorhabditis elegans Hypothetical
           protein W06G6.9 protein.
          Length = 100

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = +1

Query: 445 CCCSFME--RCPSSFLECCRICSPP 513
           CC  F E  RC  S L C  +C+PP
Sbjct: 76  CCRCFNEVCRCVGSILFCFSLCAPP 100


>AC006665-5|AAF39907.1|  630|Caenorhabditis elegans Hypothetical
           protein H27M09.1 protein.
          Length = 630

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -1

Query: 831 FVRRIPRKPIVWAKS*LFKPSLVNRGQPGIA 739
           F   +PRK   +AKS L KP +VN G+ G A
Sbjct: 383 FSATMPRKIQFFAKSALVKPIVVNVGRAGAA 413


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,272,998
Number of Sequences: 27780
Number of extensions: 432400
Number of successful extensions: 1852
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1844
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)