Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30077
         (849 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   4.7  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   4.7  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   8.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   8.2  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +3

Query: 126 MKSMIVVACLALACGAHASGWAG 194
           +  ++++  LA  CGA  + +AG
Sbjct: 2   LSKVVLLVALAAICGAQGASYAG 24


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +3

Query: 126 MKSMIVVACLALACGAHASGWAG 194
           +  ++++  LA  CGA  + +AG
Sbjct: 2   LSKVVLLVALAAICGAQGASYAG 24


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 775 LKQSGLSPNDWFPGNSSNK 831
           LKQ+  S  DW  G ++N+
Sbjct: 571 LKQANQSVPDWMMGGNANR 589


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 747 GIAQEGRPPVPINWLNRKHSKF 682
           G+A  G PP+ I+WL    S F
Sbjct: 633 GVAA-GDPPLTISWLKDGQSPF 653


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,960
Number of Sequences: 438
Number of extensions: 5089
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)