Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30076
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.17 |apn1||AP endonuclease Apn1|Schizosaccharomyces pombe...    31   0.20 
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    30   0.46 
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        27   2.5  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    26   7.5  

>SPCC622.17 |apn1||AP endonuclease Apn1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 342

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 73  ENNVGAQVLSGWYLNPLKGPIG 138
           +  VGA+ +SGW+LN  K P+G
Sbjct: 195 DEKVGAKYVSGWHLNDSKAPLG 216


>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 29.9 bits (64), Expect = 0.46
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = +1

Query: 451 HSITATKVSKFNISMQLYNSTDSQIVDATKITNCSLTKSRCYYSCIRKYDW 603
           HS+  T+ S+  +++    S+DS  +    + +  L  S C++   R  DW
Sbjct: 342 HSLQTTESSQRELAISTVGSSDSSGIFLASLVSLFLEPSLCHFQADRGRDW 392


>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 635 YVFLFILECPCDDFANVMYHKLIFLIHSYPYILKC 739
           Y   F  +  C D+ N++    +F+I+ Y Y+L C
Sbjct: 42  YSIPFFYDRICYDYKNILLKYELFIIYYYYYLLIC 76


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 506 LYSCIEMLNFDTFVAVIECYPITVLV 429
           L +CI+ L+  TFVA +E   + VLV
Sbjct: 232 LEACIKDLSATTFVATVESVALAVLV 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,691,451
Number of Sequences: 5004
Number of extensions: 46515
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)