Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30076
         (828 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crum...    28   7.1  
Z82262-1|CAB05151.2|  361|Caenorhabditis elegans Hypothetical pr...    28   9.4  

>U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crumbs
            homolog protein 1 protein.
          Length = 1722

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 487  ISMQLYNSTDSQIVDATKITNCSLTKSRCYYSCIRKYDWYYNC 615
            I  Q  NS      + TK TNC  +  + +  C++K D ++ C
Sbjct: 1273 IVCQCGNSWMGDSCNVTKTTNCKDSPCQNFGQCMQKTDTFFEC 1315


>Z82262-1|CAB05151.2|  361|Caenorhabditis elegans Hypothetical
           protein C43F9.4 protein.
          Length = 361

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -2

Query: 461 VIECYPITVLVEPVAYDEGLDERTNP*TQPTEFLAGSSQWVAF 333
           V+EC    + +  V   + L  + NP  +  +FL  S+ W++F
Sbjct: 156 VLECMSFRMTMALVRTTDVLTSKINPFPRVIQFLLSSAPWISF 198


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,645,451
Number of Sequences: 27780
Number of extensions: 254603
Number of successful extensions: 521
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)