Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30076
         (828 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              23   2.6  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    23   2.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   6.0  

>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -2

Query: 563 FVREQLVIFVASTI*LSVELYSCIEMLNFDTFVAVIECY 447
           F   Q+   VAST   S E Y C E    +  + +  CY
Sbjct: 72  FCNSQVQPSVASTTGFSKECYCCRESYLKERHITLHHCY 110


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -2

Query: 563 FVREQLVIFVASTI*LSVELYSCIEMLNFDTFVAVIECY 447
           F   Q+   VAST   S E Y C E    +  + +  CY
Sbjct: 72  FCNSQVQPSVASTTGFSKECYCCRESYLKERHITLHHCY 110


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 311 AESTTGSETRPTEKIRRETQ 370
           A  TTG+ T PT ++R+  Q
Sbjct: 252 AAMTTGTTTIPTRRLRKRRQ 271


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +1

Query: 496 QLYNSTDSQIVDATKITNCSLTKSRCYYSCIRKYDWYYNCYLVKL 630
           Q  N  +S  +D  +++  +     C  S I KY  + N   VKL
Sbjct: 167 QTINRKNSDYLDNQEVSMENTENKSCTDSDIEKYKMFCNLENVKL 211


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,132
Number of Sequences: 438
Number of extensions: 3496
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)