Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30075
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   4.0  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    27   4.0  
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz...    26   7.1  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    26   7.1  
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc...    25   9.4  
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac...    25   9.4  
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    25   9.4  

>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = -1

Query: 75  NCLDCYC-LYKNLCIRYLYHHCSSL 4
           N L C+  L  N CI Y Y  CSSL
Sbjct: 718 NFLRCFASLLHNCCIFYAYRACSSL 742


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 666 WDADDKEEIN*RKERTKKLSHQRWRQK 746
           W   ++EEIN +KE   K   ++ RQK
Sbjct: 59  WKKQEQEEINRKKEEELKSKFEKLRQK 85


>SPCC1259.09c |||pyruvate dehydrogenase protein x
          component|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 456

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 87 HCFHNCLDCYCLYKNLCIRYLYHHCSSL 4
          H  H C+       +L ++  Y HCS+L
Sbjct: 4  HYIHQCVKASSCKHSLSVKQRYFHCSAL 31


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +3

Query: 126 NDTRYNSGGRSYNTSRDRVDESYKKTYRNESSVNYSNREYGGREDHQKEKE 278
           NDT  N G        D V+ + KK   +E +V  +  E    E+ ++++E
Sbjct: 70  NDTTINKGEDGNENEVDNVNNNDKK--EDEDNVEENEEEADANEEEEEDEE 118


>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 493

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +3

Query: 582 PSITTVSLEASRDAFHQIQRRSISTEIFWDADDKEEIN*RKERTKKLSHQRWRQK 746
           PS+ + S    +      +R     EI  D+DD+++I    ER K L +Q + ++
Sbjct: 12  PSLISKSYNMKKRPVIGTRRHFARKEIESDSDDEDDIFLAGERKKYLQNQSYERR 66


>SPAC823.07 |||GPI-phospholipase A2 activity regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -1

Query: 126 YCMMNSLRHHHGLHCFHNCLDCYCLYKNLCIRY 28
           + M+N + H++G H    C+      K LC+ +
Sbjct: 112 FSMLNFMIHYNGYHIMRRCIPDEHPAKRLCLSW 144


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +3

Query: 135 RYNSGGRSYNTSRDRVDESYKKTYRNESSVNYS--NREYGGREDHQKEKE 278
           RYNS   +     +R    Y++T++N+S  +++  ++E    +D    KE
Sbjct: 214 RYNSLQEASRKQSERDRRQYQETFKNQSIASWTIIDQEETSSDDESLSKE 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,378,889
Number of Sequences: 5004
Number of extensions: 42201
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)