Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30075
         (789 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11390.1 68416.m01387 DC1 domain-containing protein contains ...    39   0.003
At2g33850.1 68415.m04155 expressed protein contains 1 transmembr...    30   2.0  
At4g18335.1 68417.m02720 hypothetical protein                          29   3.5  
At1g75180.3 68414.m08734 expressed protein                             29   4.6  
At1g75180.2 68414.m08733 expressed protein                             29   4.6  
At1g75180.1 68414.m08732 expressed protein                             29   4.6  
At1g79350.1 68414.m09247 DNA-binding protein, putative contains ...    28   8.1  

>At3g11390.1 68416.m01387 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 710

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 21/60 (35%), Positives = 29/60 (48%)
 Frame = -1

Query: 258 PLYLHTLCLNS*QSFHFDMFFCKIHLLCHDWCCNSFHRYYNEYHYCMMNSLRHHHGLHCF 79
           P   HTL L S ++  FD F C+ H+        S   Y+N ++YC    +  HHG H F
Sbjct: 118 PSQPHTLSLRSGRNTKFDCFSCRKHM--------SPLTYHNYHYYCKTCDMEFHHGCHTF 169


>At2g33850.1 68415.m04155 expressed protein contains 1 transmembrane
           domain; similar to Protein E6 (Swiss-Prot:Q01197)
           [Gossypium hirsutum]
          Length = 267

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +3

Query: 123 NNDTRYNSGGRSYNTS-RDR-VDESYKKTYRNESSVNYSNREYGGREDHQKE 272
           N DT Y     +Y T  RD  +++ YK  Y N+ +  Y N    G E  +KE
Sbjct: 135 NKDTSYYENSNAYGTDKRDNDINDPYKG-YSNKDTSYYENPNTYGTEKREKE 185


>At4g18335.1 68417.m02720 hypothetical protein
          Length = 164

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 147 RYYNEYHYCMMNSLRHHHGLH 85
           RY ++Y+Y   ++LRH  GLH
Sbjct: 83  RYNHQYYYYYRHTLRHRRGLH 103


>At1g75180.3 68414.m08734 expressed protein
          Length = 315

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +3

Query: 189 SYKKTYRNESSVNYSNREYGGRED 260
           SYK+ Y  E S  Y NREY   ED
Sbjct: 245 SYKQEYEGEHSDMYWNREYADGED 268


>At1g75180.2 68414.m08733 expressed protein
          Length = 315

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +3

Query: 189 SYKKTYRNESSVNYSNREYGGRED 260
           SYK+ Y  E S  Y NREY   ED
Sbjct: 245 SYKQEYEGEHSDMYWNREYADGED 268


>At1g75180.1 68414.m08732 expressed protein
          Length = 315

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +3

Query: 189 SYKKTYRNESSVNYSNREYGGRED 260
           SYK+ Y  E S  Y NREY   ED
Sbjct: 245 SYKQEYEGEHSDMYWNREYADGED 268


>At1g79350.1 68414.m09247 DNA-binding protein, putative contains Pfam
            PF00628: PHD-finger domain; contains TIGRFAMS TIGR01053:
            zinc finger domain, LSD1 subclass; contains Pfam PF00271:
            Helicase conserved C-terminal domain; similar to WSSV086
            (GI:19481678)[shrimp white spot syndrome virus]; similar
            to nuclear protein Np95 (GI:17939938) [Mus musculus]
          Length = 1299

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +3

Query: 597  VSLEASRDAFHQIQRRSISTEIFWDADDKEEIN*RKERTKKLSHQRWR 740
            VSL+A R A +Q +R  ++ E+ W AD   +   R  R+ + S   +R
Sbjct: 867  VSLQADRRAVNQKRRVHLTLELPWSADRAIQQFGRTHRSNQTSAPEYR 914


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,951,450
Number of Sequences: 28952
Number of extensions: 235477
Number of successful extensions: 772
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)