Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30074
(556 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.) 142 1e-34
SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.) 141 4e-34
SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0) 141 4e-34
SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0) 141 4e-34
SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29) 127 5e-30
SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037) 74 7e-14
SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10) 51 7e-07
SB_59029| Best HMM Match : Pkinase (HMM E-Value=0) 44 6e-05
SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11) 37 0.010
SB_1967| Best HMM Match : ubiquitin (HMM E-Value=4.7e-12) 36 0.017
SB_49791| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.029
SB_10325| Best HMM Match : ubiquitin (HMM E-Value=3.4e-05) 35 0.051
SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.090
SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18) 32 0.27
SB_54258| Best HMM Match : ubiquitin (HMM E-Value=0.00055) 32 0.36
SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.48
SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01) 31 0.63
SB_5154| Best HMM Match : zf-C2H2 (HMM E-Value=1.8) 29 1.9
SB_31564| Best HMM Match : ubiquitin (HMM E-Value=0.0026) 29 3.4
SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022) 28 4.5
SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_35539| Best HMM Match : RVT_1 (HMM E-Value=1.7e-07) 28 5.9
SB_40252| Best HMM Match : LRR_1 (HMM E-Value=8.2e-12) 27 7.8
SB_56569| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
>SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 142 bits (345), Expect = 1e-34
Identities = 71/87 (81%), Positives = 72/87 (82%)
Frame = +3
Query: 3 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 182
QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 183 QKESTLHLVXXXXXXXXXXXXXNYPHP 263
QKESTLHLV NY P
Sbjct: 62 QKESTLHLVLRLRGGAKKRKKKNYTTP 88
Score = 79.8 bits (188), Expect = 1e-15
Identities = 39/70 (55%), Positives = 44/70 (62%)
Frame = +2
Query: 239 QEEELPTPXXXXXXXXXXXLAVLRFYKVDENGKIHRLRREFTGEQCGAGVFMAVMEDRHY 418
+++ TP LAVL++YKVDENGKI RLRRE E CGAGVFMA DR Y
Sbjct: 81 KKKNYTTPKKIKHKKKKVKLAVLKYYKVDENGKITRLRRECPSESCGAGVFMASHFDRQY 140
Query: 419 CGKCHSTMVF 448
CGKC T VF
Sbjct: 141 CGKCCLTYVF 150
>SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 533
Score = 141 bits (341), Expect = 4e-34
Identities = 68/69 (98%), Positives = 69/69 (100%)
Frame = +3
Query: 3 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 182
QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 183 QKESTLHLV 209
QKESTLHLV
Sbjct: 62 QKESTLHLV 70
Score = 141 bits (341), Expect = 4e-34
Identities = 68/69 (98%), Positives = 69/69 (100%)
Frame = +3
Query: 3 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 182
QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 78 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 137
Query: 183 QKESTLHLV 209
QKESTLHLV
Sbjct: 138 QKESTLHLV 146
Score = 141 bits (341), Expect = 4e-34
Identities = 68/69 (98%), Positives = 69/69 (100%)
Frame = +3
Query: 3 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 182
QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 154 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 213
Query: 183 QKESTLHLV 209
QKESTLHLV
Sbjct: 214 QKESTLHLV 222
Score = 141 bits (341), Expect = 4e-34
Identities = 68/69 (98%), Positives = 69/69 (100%)
Frame = +3
Query: 3 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 182
QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 230 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 289
Query: 183 QKESTLHLV 209
QKESTLHLV
Sbjct: 290 QKESTLHLV 298
Score = 141 bits (341), Expect = 4e-34
Identities = 68/69 (98%), Positives = 69/69 (100%)
Frame = +3
Query: 3 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 182
QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 306 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 365
Query: 183 QKESTLHLV 209
QKESTLHLV
Sbjct: 366 QKESTLHLV 374
Score = 141 bits (341), Expect = 4e-34
Identities = 68/69 (98%), Positives = 69/69 (100%)
Frame = +3
Query: 3 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 182
QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 382 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 441
Query: 183 QKESTLHLV 209
QKESTLHLV
Sbjct: 442 QKESTLHLV 450
Score = 141 bits (341), Expect = 4e-34
Identities = 68/69 (98%), Positives = 69/69 (100%)
Frame = +3
Query: 3 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 182
QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 458 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 517
Query: 183 QKESTLHLV 209
QKESTLHLV
Sbjct: 518 QKESTLHLV 526
>SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 381
Score = 141 bits (341), Expect = 4e-34
Identities = 68/69 (98%), Positives = 69/69 (100%)
Frame = +3
Query: 3 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 182
QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 183 QKESTLHLV 209
QKESTLHLV
Sbjct: 62 QKESTLHLV 70
Score = 141 bits (341), Expect = 4e-34
Identities = 68/69 (98%), Positives = 69/69 (100%)
Frame = +3
Query: 3 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 182
QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 78 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 137
Query: 183 QKESTLHLV 209
QKESTLHLV
Sbjct: 138 QKESTLHLV 146
Score = 141 bits (341), Expect = 4e-34
Identities = 68/69 (98%), Positives = 69/69 (100%)
Frame = +3
Query: 3 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 182
QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 154 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 213
Query: 183 QKESTLHLV 209
QKESTLHLV
Sbjct: 214 QKESTLHLV 222
Score = 141 bits (341), Expect = 4e-34
Identities = 68/69 (98%), Positives = 69/69 (100%)
Frame = +3
Query: 3 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 182
QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 230 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 289
Query: 183 QKESTLHLV 209
QKESTLHLV
Sbjct: 290 QKESTLHLV 298
Score = 141 bits (341), Expect = 4e-34
Identities = 68/69 (98%), Positives = 69/69 (100%)
Frame = +3
Query: 3 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 182
QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 306 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 365
Query: 183 QKESTLHLV 209
QKESTLHLV
Sbjct: 366 QKESTLHLV 374
>SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 147
Score = 141 bits (341), Expect = 4e-34
Identities = 68/69 (98%), Positives = 69/69 (100%)
Frame = +3
Query: 3 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 182
QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 183 QKESTLHLV 209
QKESTLHLV
Sbjct: 62 QKESTLHLV 70
Score = 79.0 bits (186), Expect = 2e-15
Identities = 39/68 (57%), Positives = 52/68 (76%)
Frame = +3
Query: 3 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 182
QI VK KT TL+VE SDT+E+VK KIQ++EGIPP QRL++ ++L D R+L+DYNI
Sbjct: 78 QISVKA-HWKTFTLDVEASDTVESVKEKIQNREGIPPKVQRLLYEEEELVDNRSLADYNI 136
Query: 183 QKESTLHL 206
++ S LHL
Sbjct: 137 KQGSILHL 144
>SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29)
Length = 142
Score = 127 bits (307), Expect = 5e-30
Identities = 61/62 (98%), Positives = 62/62 (100%)
Frame = +3
Query: 3 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 182
QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 80 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 139
Query: 183 QK 188
QK
Sbjct: 140 QK 141
>SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037)
Length = 150
Score = 74.1 bits (174), Expect = 7e-14
Identities = 34/35 (97%), Positives = 35/35 (100%)
Frame = +3
Query: 105 IPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 209
IPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 2 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 36
>SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10)
Length = 333
Score = 50.8 bits (116), Expect = 7e-07
Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = +3
Query: 6 IFVKTLTGKTITLEVE-PSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 182
I V TLTG+ I + + P TI VK I+ K G P +QQRL+F G+ L D T I
Sbjct: 73 IAVLTLTGERILIPFKSPKHTIIEVKYLIEAKGGYPKDQQRLVFNGQVLSDEDTFEKVGI 132
Query: 183 QKESTLHLV 209
+TLHL+
Sbjct: 133 FAGATLHLI 141
>SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 1023
Score = 44.4 bits (100), Expect = 6e-05
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Frame = +3
Query: 6 IFVKTLTGKTITLEVEPSDTIENVKAKIQ---DKEGIPPNQQRLIFAGKQLEDGRTLSDY 176
I KTL +T +E+ +T+ +K KI+ K+ P +LI+AGK L D L +Y
Sbjct: 69 ITFKTLQQQTFKVEIGEDETVLKLKQKIEADKGKDAYPHGNIKLIYAGKILNDDNPLKEY 128
Query: 177 NIQKES 194
NI ++S
Sbjct: 129 NIDEKS 134
>SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11)
Length = 744
Score = 37.1 bits (82), Expect = 0.010
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +3
Query: 3 QIFVKTLTGKTITLEVEPSDT-IENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 179
Q+F T TL +D + +K++I+ K GIP + QRL F K+L D TL+ N
Sbjct: 7 QVFAALPTEDVCTLRDLTTDMHVFQLKSRIELKTGIPGDIQRLHFMNKELYDDATLAKVN 66
Query: 180 IQK 188
+++
Sbjct: 67 LKQ 69
>SB_1967| Best HMM Match : ubiquitin (HMM E-Value=4.7e-12)
Length = 348
Score = 36.3 bits (80), Expect = 0.017
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +3
Query: 27 GKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLED-GRTLSDYNIQKESTLH 203
G TL+V +EN +A ++ + G+P ++ L G QL D +TL+ Y++++ +
Sbjct: 10 GSIFTLDVSVDLEVENFRALLEFESGVPASEISLYHDGVQLSDLKKTLTAYSVKENDVIL 69
Query: 204 LV 209
+V
Sbjct: 70 MV 71
>SB_49791| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 35
Score = 35.5 bits (78), Expect = 0.029
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +3
Query: 6 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKE 101
++++TLTG L V P +TI +VKAKIQ E
Sbjct: 3 LYIQTLTGTAFELRVSPFETIMSVKAKIQRLE 34
>SB_10325| Best HMM Match : ubiquitin (HMM E-Value=3.4e-05)
Length = 198
Score = 34.7 bits (76), Expect = 0.051
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +3
Query: 96 KEGIPPNQQRLIFAGKQLEDGRTLSDYN 179
+EGIP +QRLIF GK L+D + L +++
Sbjct: 19 EEGIPAERQRLIFKGKVLQDEKKLKEFD 46
>SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1076
Score = 33.9 bits (74), Expect = 0.090
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +3
Query: 24 TGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQK 188
+G L++ + TIE ++ ++ DK G PP QR I K + +L +++
Sbjct: 44 SGGAFNLQIPLNTTIEKLQNEVADKYGFPPKVQRWIIGKKMAKPNESLLQCKVRE 98
>SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)
Length = 796
Score = 32.3 bits (70), Expect = 0.27
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +3
Query: 102 GIPPNQQRLIFAGKQLEDGRTLSDYN 179
GIP +QRLIF GK L+D + L +++
Sbjct: 1 GIPAERQRLIFKGKVLQDEKKLKEFD 26
>SB_54258| Best HMM Match : ubiquitin (HMM E-Value=0.00055)
Length = 411
Score = 31.9 bits (69), Expect = 0.36
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +3
Query: 9 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQK 188
FV G+ ITL P + ++ + G P ++ K LED T++D + Q
Sbjct: 169 FVVMPEGQVITLHCNPRQSFSELRNHFSSEFGQPAEAILMLHEDKILEDQGTIADLSHQP 228
Query: 189 ESTLHL 206
+TL +
Sbjct: 229 GATLQI 234
>SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1353
Score = 31.5 bits (68), Expect = 0.48
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 63 TIENVKAKIQDKEGIPPNQQRLIFA-GKQLEDGRTLSDYNIQKESTLHL 206
T+ ++K + +K G+ + RL+ GK++ D L DYNI T+ L
Sbjct: 86 TVGDLKTMVTNKTGLHVSVFRLVIPEGKEMFDCNLLKDYNISTGDTIRL 134
>SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01)
Length = 792
Score = 31.1 bits (67), Expect = 0.63
Identities = 16/64 (25%), Positives = 34/64 (53%)
Frame = +3
Query: 6 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQ 185
+ ++T G T+ +E+ ++E++KA+ + + GIP RL LED + +
Sbjct: 185 MLLQTRGGSTLEIEITERTSVEDLKAEAELRVGIPVELIRLQVNKVNLEDSEKICERGHL 244
Query: 186 KEST 197
+++T
Sbjct: 245 QKAT 248
>SB_5154| Best HMM Match : zf-C2H2 (HMM E-Value=1.8)
Length = 180
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +2
Query: 53 AVRYHRECES*NSRQRGNPSQSTEVDLCWKAAGRWTYPLGLQY 181
+ Y +E E + RQR +S E D+C K R+T Y
Sbjct: 39 STEYTQESEGLDERQRARGKKSFECDICGKCFSRFTITTKYNY 81
>SB_31564| Best HMM Match : ubiquitin (HMM E-Value=0.0026)
Length = 309
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Frame = +3
Query: 12 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGR---TLSDYNI 182
V + G+T + P +I +K KI + +QRL++ +L++ + LS++ +
Sbjct: 60 VAMMGGETTVIPYNPVMSIAELKLKISQNIRVDRLKQRLMYNDTELKENKGSGKLSEFGV 119
Query: 183 QKESTLHLV 209
+T+ L+
Sbjct: 120 PPYATISLI 128
>SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)
Length = 1671
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = -1
Query: 517 SIITAVASVPYRLEGTYLFVVVFEDHRAVTLPAVVTVLHHRHEHSGAALL 368
++++A+ +P + +LF +F D AV V RH++ + LL
Sbjct: 471 AVVSAMRKLPEKHTDEHLFSTLFSDEHTDVKAAVFEVFVERHQNLSSRLL 520
>SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 654
Score = 27.9 bits (59), Expect = 5.9
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1
Query: 421 AVVTVLHHRHEHSGA 377
A++TV+HHRH H A
Sbjct: 525 AIITVIHHRHHHHPA 539
>SB_35539| Best HMM Match : RVT_1 (HMM E-Value=1.7e-07)
Length = 1105
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +2
Query: 95 QRGNPSQSTEVDLCWKAAGRWTYPLGLQYPEGIHPPPGVEAS 220
QRG S+ T + W+ +G + L IHPP V S
Sbjct: 299 QRGVSSRKTMISKAWQVSGVYHITLDANVTPVIHPPRRVAIS 340
>SB_40252| Best HMM Match : LRR_1 (HMM E-Value=8.2e-12)
Length = 481
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/44 (31%), Positives = 28/44 (63%)
Frame = +3
Query: 21 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLE 152
L G +IT+ +E D +EN++ +K+ +PP ++L+F + L+
Sbjct: 102 LGGNSITV-IEGLDKLENLRELHMEKQHLPPG-EKLLFDPRTLQ 143
>SB_56569| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 430
Score = 27.5 bits (58), Expect = 7.8
Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 4/105 (3%)
Frame = -2
Query: 393 MNTPAPHCSPVNSRRRRWI---LPFSSTL*NLRTASLTFFFLCLI-FLGVGNSSSCVS*R 226
M+TP H +PVN W+ LP + + LRT S + + C + GV + R
Sbjct: 106 MSTPLSHDAPVNENSPNWLAYRLPL-ARMKALRTQSSHWRYTCSFPYSGVDYTDYL---R 161
Query: 225 HHEASTPGGGWIPSGYCSPRGYVHLPAAFQQRSTSVDWEGFPLCL 91
++ C Y+++ +T W+ P+C+
Sbjct: 162 ARLVDVDPISFVGEMICKRVEYINIRGNAAAHTTVAFWQKSPICI 206
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,097,260
Number of Sequences: 59808
Number of extensions: 357384
Number of successful extensions: 1018
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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