Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30074
(556 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L36067-1|AAA29362.1| 229|Anopheles gambiae polyubiquitin protein. 141 2e-35
AY705401-1|AAU12510.1| 490|Anopheles gambiae nicotinic acetylch... 27 0.31
AY705400-1|AAU12509.1| 490|Anopheles gambiae nicotinic acetylch... 24 3.9
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein. 23 5.1
M93689-2|AAA29367.1| 975|Anopheles gambiae protein ( Anopheles ... 23 8.9
EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calc... 23 8.9
CR954257-13|CAJ14164.1| 420|Anopheles gambiae predicted protein... 23 8.9
AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein p... 23 8.9
AB090812-1|BAC57899.1| 541|Anopheles gambiae gag-like protein p... 23 8.9
>L36067-1|AAA29362.1| 229|Anopheles gambiae polyubiquitin protein.
Length = 229
Score = 141 bits (341), Expect = 2e-35
Identities = 68/69 (98%), Positives = 69/69 (100%)
Frame = +3
Query: 3 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 182
QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 183 QKESTLHLV 209
QKESTLHLV
Sbjct: 62 QKESTLHLV 70
Score = 141 bits (341), Expect = 2e-35
Identities = 68/69 (98%), Positives = 69/69 (100%)
Frame = +3
Query: 3 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 182
QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 78 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 137
Query: 183 QKESTLHLV 209
QKESTLHLV
Sbjct: 138 QKESTLHLV 146
Score = 141 bits (341), Expect = 2e-35
Identities = 68/69 (98%), Positives = 69/69 (100%)
Frame = +3
Query: 3 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 182
QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 154 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 213
Query: 183 QKESTLHLV 209
QKESTLHLV
Sbjct: 214 QKESTLHLV 222
>AY705401-1|AAU12510.1| 490|Anopheles gambiae nicotinic
acetylcholine receptor subunitalpha 6 protein.
Length = 490
Score = 27.5 bits (58), Expect = 0.31
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -1
Query: 553 LSSDTVSRFYLKSIITAVA-SVPYRLEGTYLFVVVFEDHRAVTLPAVVTVLHHR 395
L S TV + +IT + +VP L GTY ++F +V L VV HHR
Sbjct: 270 LVSQTVFSLLVGHVITKTSEAVP--LLGTYFNCIMFMVASSVVLTVVVLNYHHR 321
>AY705400-1|AAU12509.1| 490|Anopheles gambiae nicotinic
acetylcholine receptor subunitalpha 6 protein.
Length = 490
Score = 23.8 bits (49), Expect = 3.9
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 481 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 395
L GTY ++F +V L VV HHR
Sbjct: 293 LLGTYFNCIMFMVASSVVLTVVVLNYHHR 321
>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
Length = 1133
Score = 23.4 bits (48), Expect = 5.1
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 229 LRNARRRITHTQEDQAQEEEGQTSR 303
+RNA R+T Q+D Q E+ R
Sbjct: 405 MRNASERVTRIQKDARQIEQDLQER 429
>M93689-2|AAA29367.1| 975|Anopheles gambiae protein ( Anopheles
gambiae T1 retroposon. ).
Length = 975
Score = 22.6 bits (46), Expect = 8.9
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -2
Query: 270 IFLGVGNSSSCVS*RHH 220
IFL V +SS C+S +H+
Sbjct: 708 IFLPVSSSSDCMSLQHY 724
>EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calcium
channel alpha2-delta subunit 1 protein.
Length = 1256
Score = 22.6 bits (46), Expect = 8.9
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -1
Query: 454 VFEDHRAVTLPAVVTVLHHRHE 389
+F DHR PA V L HE
Sbjct: 903 IFIDHRGHKAPAAVVGLQFLHE 924
>CR954257-13|CAJ14164.1| 420|Anopheles gambiae predicted protein
protein.
Length = 420
Score = 22.6 bits (46), Expect = 8.9
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Frame = +2
Query: 197 PPPGVEASWWR*ETQEEELPTPXXXXXXXXXXXLAVL---RFYKVDENGKIHRLRREFTG 367
PP G A+ + Q++ELP P L V R + + + + +E+T
Sbjct: 201 PPKGAGATGTQHSDQQQELPRPSSPPAIRRSGTLEVTFSERTFVTPKRESMEQAEQEWTL 260
Query: 368 EQCGA 382
+Q A
Sbjct: 261 KQAAA 265
>AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein
protein.
Length = 1077
Score = 22.6 bits (46), Expect = 8.9
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = -1
Query: 499 ASVPYRLEGTYLFVVVFEDHRAVTLPAVVTVLHHRHEHSG 380
+S+ +L T + V+ F DH+A+T+ + +R ++G
Sbjct: 207 SSLETQLRTTDMHVLSFSDHKALTVRLCLPTPPNRLTNNG 246
>AB090812-1|BAC57899.1| 541|Anopheles gambiae gag-like protein
protein.
Length = 541
Score = 22.6 bits (46), Expect = 8.9
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +2
Query: 164 PLGLQYPEGIHPPPGV 211
P G+ P G H PPG+
Sbjct: 5 PPGVNRPPGSHRPPGL 20
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 569,049
Number of Sequences: 2352
Number of extensions: 11931
Number of successful extensions: 34
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 51722361
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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