SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30071
         (477 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef...   141   6e-35
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef...   141   6e-35
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef...   141   6e-35
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    81   1e-16
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    73   3e-14
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E...    53   2e-08
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    36   0.004
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    36   0.004
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch...    33   0.017
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    33   0.030
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz...    32   0.039
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su...    31   0.091
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    31   0.12 
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    30   0.16 
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    29   0.28 
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    28   0.64 
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    27   1.9  
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy...    26   3.4  
SPAC4D7.09 |tif223||translation initiation factor eIF2B|Schizosa...    26   3.4  
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||...    25   4.5  
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    25   4.5  
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom...    25   5.9  
SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.9  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   7.9  

>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
           Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 460

 Score =  141 bits (341), Expect = 6e-35
 Identities = 64/68 (94%), Positives = 66/68 (97%)
 Frame = +1

Query: 43  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
           MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1   MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60

Query: 223 DKLKAERE 246
           DKLKAERE
Sbjct: 61  DKLKAERE 68



 Score =  119 bits (286), Expect = 3e-28
 Identities = 53/62 (85%), Positives = 57/62 (91%)
 Frame = +3

Query: 249 GYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 428
           G TIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+  GTGEFEAGISK
Sbjct: 70  GITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISK 129

Query: 429 NG 434
           +G
Sbjct: 130 DG 131


>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
           Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score =  141 bits (341), Expect = 6e-35
 Identities = 64/68 (94%), Positives = 66/68 (97%)
 Frame = +1

Query: 43  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
           MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1   MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60

Query: 223 DKLKAERE 246
           DKLKAERE
Sbjct: 61  DKLKAERE 68



 Score =  119 bits (287), Expect = 2e-28
 Identities = 54/62 (87%), Positives = 57/62 (91%)
 Frame = +3

Query: 249 GYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 428
           G TIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+  GTGEFEAGISK
Sbjct: 70  GITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGISK 129

Query: 429 NG 434
           +G
Sbjct: 130 DG 131


>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
           Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score =  141 bits (341), Expect = 6e-35
 Identities = 64/68 (94%), Positives = 66/68 (97%)
 Frame = +1

Query: 43  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
           MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1   MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60

Query: 223 DKLKAERE 246
           DKLKAERE
Sbjct: 61  DKLKAERE 68



 Score =  119 bits (286), Expect = 3e-28
 Identities = 53/62 (85%), Positives = 57/62 (91%)
 Frame = +3

Query: 249 GYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 428
           G TIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+  GTGEFEAGISK
Sbjct: 70  GITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISK 129

Query: 429 NG 434
           +G
Sbjct: 130 DG 131


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 80.6 bits (190), Expect = 1e-16
 Identities = 35/64 (54%), Positives = 47/64 (73%)
 Frame = +1

Query: 55  KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 234
           K H+NIV IGHVD+GKST  G++++  G +DKRT+EK E+EA+E GK S+  +W LD   
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295

Query: 235 AERE 246
            ERE
Sbjct: 296 EERE 299



 Score = 67.7 bits (158), Expect = 9e-13
 Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
 Frame = +3

Query: 249 GYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 428
           G T+++    FET     +++DAPGH+ ++ NMI G SQAD  VL+++A  GEFEAG  +
Sbjct: 301 GKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFER 360

Query: 429 NG-SNP*ACLAR 461
            G +   A LAR
Sbjct: 361 GGQTREHAVLAR 372


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 72.5 bits (170), Expect = 3e-14
 Identities = 31/63 (49%), Positives = 44/63 (69%)
 Frame = +1

Query: 55  KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 234
           K  +++VV GHVDSGKST  G ++++ G I+ R+++K   EA   GKGSF YAW+LD  +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234

Query: 235 AER 243
            ER
Sbjct: 235 EER 237



 Score = 66.1 bits (154), Expect = 3e-12
 Identities = 32/62 (51%), Positives = 38/62 (61%)
 Frame = +3

Query: 249 GYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 428
           G T+D+A   FE+ K    I DAPGHRDFI  MI G S AD AVL+V +    FE G  +
Sbjct: 240 GVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLE 299

Query: 429 NG 434
           NG
Sbjct: 300 NG 301


>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
           EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 53.2 bits (122), Expect = 2e-08
 Identities = 23/53 (43%), Positives = 35/53 (66%)
 Frame = +3

Query: 249 GYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 407
           G TI  A  ++ET+  +   +D PGH D+IKNMITG +  D A+++V+A  G+
Sbjct: 101 GITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQ 153



 Score = 35.1 bits (77), Expect = 0.006
 Identities = 16/29 (55%), Positives = 20/29 (68%)
 Frame = +1

Query: 49  KEKTHINIVVIGHVDSGKSTTTGHLIYKC 135
           ++K H+NI  IGHVD GK+T T   I KC
Sbjct: 49  RKKPHVNIGTIGHVDHGKTTLTA-AITKC 76


>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 35.5 bits (78), Expect = 0.004
 Identities = 17/32 (53%), Positives = 19/32 (59%)
 Frame = +1

Query: 43  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 138
           MGK     N+ VI HVD GKST T  L+ K G
Sbjct: 13  MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44



 Score = 27.9 bits (59), Expect = 0.84
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 294 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 389
           + V +ID+PGH DF   +       D A+++V
Sbjct: 98  FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 35.5 bits (78), Expect = 0.004
 Identities = 17/32 (53%), Positives = 19/32 (59%)
 Frame = +1

Query: 43  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 138
           MGK     N+ VI HVD GKST T  L+ K G
Sbjct: 13  MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44



 Score = 27.9 bits (59), Expect = 0.84
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 294 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 389
           + V +ID+PGH DF   +       D A+++V
Sbjct: 98  FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129


>SPBC1271.15c |||translation initiation factor
           IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 33.5 bits (73), Expect = 0.017
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 279 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 404
           F+    ++T +D PGH  F      G + AD  VL+VA   G
Sbjct: 215 FDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256


>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 32.7 bits (71), Expect = 0.030
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +3

Query: 249 GYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 404
           G TI+ A   F      + +ID PGH DF   +    +  D AV I+    G
Sbjct: 78  GITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAG 129



 Score = 28.7 bits (61), Expect = 0.48
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 67  NIVVIGHVDSGKSTTTGHLIYKCG 138
           N+ +I H+D+GK+T T  ++Y  G
Sbjct: 30  NVGIIAHIDAGKTTLTEKMLYYGG 53


>SPBC1306.01c ||SPBC409.22c|translation elongation factor
           G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 770

 Score = 32.3 bits (70), Expect = 0.039
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = +3

Query: 279 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 404
           FE S Y + IID PGH DF   +       D AVL++ A +G
Sbjct: 141 FEKS-YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSG 181



 Score = 29.1 bits (62), Expect = 0.37
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 67  NIVVIGHVDSGKSTTTGHLIYKCGGI 144
           NI +  H+DSGK+T T  ++Y  G I
Sbjct: 61  NIGISAHIDSGKTTFTERVLYYTGRI 86


>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 31.1 bits (67), Expect = 0.091
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 297 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 392
           +V+ +D PGH   +  M+ G +  D A+L++A
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIA 140



 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 37  PKMGKEKTHINIVVIGHVDSGKST 108
           P +   +  INI  IGHV  GKST
Sbjct: 15  PAIISRQATINIGTIGHVAHGKST 38


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 30.7 bits (66), Expect = 0.12
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +3

Query: 270 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 404
           ++ +    Y + +ID PGH DF   ++   +  +  +L+V A  G
Sbjct: 116 IYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160



 Score = 24.6 bits (51), Expect = 7.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 67  NIVVIGHVDSGKSTTTGHLIYKCGGIDK 150
           N  VI H+D GKST +  ++   G I++
Sbjct: 60  NWAVIAHIDHGKSTLSDCILKLTGVINE 87


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 30.3 bits (65), Expect = 0.16
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 294 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 404
           Y + +ID+PGH DF   + + +   D A ++V A  G
Sbjct: 94  YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 29.5 bits (63), Expect = 0.28
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 306 IIDAPGHRDFIKNMITGTSQADCAVLIV 389
           IID PGH  F      GTS  + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 28.3 bits (60), Expect = 0.64
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -2

Query: 344 VLDEISVSRSINDGNIVLASFELPESNIDCIPSSRSAFSLSN 219
           V D +    SIN  N++ A + +P  + + +PSS  +F L N
Sbjct: 87  VYDTLQELMSINSINMLYAFYYMPSGDEEKLPSSWKSFLLEN 128


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 309 IDAPGHRDFIKNMITGTSQADCAVLIV 389
           ID PGH DF+  +    + +D  VL+V
Sbjct: 214 IDTPGHVDFVDEVAAPMAISDGVVLVV 240


>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = -2

Query: 317 SINDGNIVLASFELPESNIDCIPSSRSAFSLSNTQAYLKDPLPISWASFSNFSMVRLSIP 138
           S++  +  L S+  P S    + +   A      ++YL+ PL  S  S S  + +R SIP
Sbjct: 305 SVDSASTALNSYSTPNSVSRKLTNLTPAARRLVARSYLRSPLHGSSPSASRHTALRTSIP 364


>SPAC4D7.09 |tif223||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 22/66 (33%), Positives = 30/66 (45%)
 Frame = -2

Query: 383 EHSAISLRGSCDHVLDEISVSRSINDGNIVLASFELPESNIDCIPSSRSAFSLSNTQAYL 204
           EH+A+ L  S   +L  IS  R  N GNI L S  +    +       S + L+ + A  
Sbjct: 5   EHAALPLASS-PSILGPISGGR--NRGNIQLQSIPIEFQAVVFAGFGNSLYPLTGSDALP 61

Query: 203 KDPLPI 186
           K  LPI
Sbjct: 62  KALLPI 67


>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +3

Query: 258 IDIALWKFETSKYYV--TIIDAPGHRDFIKN 344
           I+I   + E   +++  T+ID PG  DFI N
Sbjct: 73  IEITKAELEEKNFHLRLTVIDTPGFGDFINN 103


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -3

Query: 229 VCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSSDQWWWT 101
           V  +PK I  I++ F  P S  S    C+Y     S D  W T
Sbjct: 31  VLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRT 73


>SPBC1703.13c |||inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 184 PGPPSRTSRWYVCQYHHIC 128
           P PP +T + Y  QY+ +C
Sbjct: 8   PAPPKKTLQLYTPQYYGLC 26


>SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 96

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 353 CDHVLDEISVSRSINDGNIVLASFEL 276
           CDH+L  IS SR    G  +   FEL
Sbjct: 23  CDHLLQYISNSRDSKAGLKIFLVFEL 48


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 352  QEPLRLIALCSS*LPVPVNSKLVSLRTVQTREHALLGFHP 471
            ++ + L+ +C   L   VN  L+S++T   R   L+GF P
Sbjct: 988  EDSIYLLDMC---LQSVVNIPLLSIKTTAQRNCTLIGFFP 1024


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,925,384
Number of Sequences: 5004
Number of extensions: 37747
Number of successful extensions: 142
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -