Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30071
(477 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 97 7e-21
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 82 2e-16
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 78 4e-15
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 69 2e-12
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 32 0.21
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 31 0.49
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 30 0.85
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 1.1
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 28 3.4
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 27 7.9
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12) 27 7.9
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 97.1 bits (231), Expect = 7e-21
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 189
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 82.2 bits (194), Expect = 2e-16
Identities = 36/39 (92%), Positives = 37/39 (94%)
Frame = +3
Query: 249 GYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 365
G TIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 22 GITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
Score = 46.8 bits (106), Expect = 9e-06
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +1
Query: 187 MGKGSFKYAWVLDKLKAERE 246
MGKGSFKYAWVLDKLKAERE
Sbjct: 1 MGKGSFKYAWVLDKLKAERE 20
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 77.8 bits (183), Expect = 4e-15
Identities = 33/59 (55%), Positives = 44/59 (74%)
Frame = +3
Query: 258 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 434
+D+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG G
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGG 59
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 68.9 bits (161), Expect = 2e-12
Identities = 27/62 (43%), Positives = 42/62 (67%)
Frame = +3
Query: 249 GYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 428
G T+++ F+T + T++DAPGH+ F+ NMI+G +QAD VL+++A GEFE G +
Sbjct: 207 GNTVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFER 266
Query: 429 NG 434
G
Sbjct: 267 GG 268
Score = 43.2 bits (97), Expect = 1e-04
Identities = 17/40 (42%), Positives = 28/40 (70%)
Frame = +1
Query: 127 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 246
Y G +DKRT+EK+E+EA+E + ++ +W LD + ER+
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERD 205
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 32.7 bits (71), Expect = 0.16
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +3
Query: 300 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 404
+T ID PGH F G + D VL+VAA G
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 32.3 bits (70), Expect = 0.21
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 138
M K+ N+ VI HVD GKST T L+ K G
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 294 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 404
+ + +ID+PGH DF + D A+++V +G
Sbjct: 99 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 31.1 bits (67), Expect = 0.49
Identities = 11/52 (21%), Positives = 25/52 (48%)
Frame = +3
Query: 249 GYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 404
G ++ ++ F + I+D PGH+DF ++ + D ++++ G
Sbjct: 64 GISVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 30.3 bits (65), Expect = 0.85
Identities = 13/49 (26%), Positives = 20/49 (40%)
Frame = +3
Query: 249 GYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 395
G T I + + + +D PGH F G D +++VAA
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 306 IIDAPGHRDFIKNMITGTSQADCAVLIV 389
IID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 58 THINIVVIGHVDSGKSTTTGHLIY 129
T I + V+G+V+SGKST G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 67 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 165
N ++ HVD GKST L+ G I K + K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 28.3 bits (60), Expect = 3.4
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 309 IDAPGHRDFIKNMITGTSQADCAVLIVA 392
+D PGH + M+ G + D A+L++A
Sbjct: 69 VDCPGHDILMATMLNGAAVMDAALLLIA 96
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 27.1 bits (57), Expect = 7.9
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +1
Query: 40 KMGKEKTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYA 213
K+ + + NI V+GHVDSGK++ L DK + ++G SF+ A
Sbjct: 28 KIKERILNFNIGVLGHVDSGKTSLAKALSTTASTASFDKNPQSQERGITLDLGFSSFQVA 87
>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
Length = 347
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 64 INIVVIGHVDSGKSTTTGHLIY 129
+ + V+G+VD+GKST G L +
Sbjct: 230 VRVAVVGNVDAGKSTLLGVLTH 251
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,696,912
Number of Sequences: 59808
Number of extensions: 292847
Number of successful extensions: 728
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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