Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30071
         (477 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   145   2e-37
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   145   2e-37
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   131   4e-33
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...   125   2e-31
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    33   0.002
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   0.73 
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   1.7  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   1.7  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   2.2  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   6.8  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    21   6.8  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   6.8  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   9.0  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  145 bits (352), Expect = 2e-37
 Identities = 67/68 (98%), Positives = 67/68 (98%)
 Frame = +1

Query: 43  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 223 DKLKAERE 246
           DKLKAERE
Sbjct: 61  DKLKAERE 68



 Score =  127 bits (307), Expect = 5e-32
 Identities = 59/62 (95%), Positives = 60/62 (96%)
 Frame = +3

Query: 249 GYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 428
           G TIDIALWKFET+KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG GEFEAGISK
Sbjct: 70  GITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGIGEFEAGISK 129

Query: 429 NG 434
           NG
Sbjct: 130 NG 131


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  145 bits (352), Expect = 2e-37
 Identities = 67/68 (98%), Positives = 67/68 (98%)
 Frame = +1

Query: 43  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 223 DKLKAERE 246
           DKLKAERE
Sbjct: 61  DKLKAERE 68



 Score =  131 bits (316), Expect = 4e-33
 Identities = 61/62 (98%), Positives = 61/62 (98%)
 Frame = +3

Query: 249 GYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 428
           G TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK
Sbjct: 70  GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 129

Query: 429 NG 434
           NG
Sbjct: 130 NG 131



 Score = 22.6 bits (46), Expect = 2.2
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +1

Query: 436 QTREHALLGF 465
           QTREHALL F
Sbjct: 132 QTREHALLAF 141


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  131 bits (316), Expect = 4e-33
 Identities = 61/62 (98%), Positives = 61/62 (98%)
 Frame = +3

Query: 249 GYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 428
           G TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK
Sbjct: 13  GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 72

Query: 429 NG 434
           NG
Sbjct: 73  NG 74



 Score = 27.5 bits (58), Expect = 0.078
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 214 WVLDKLKAERE 246
           WVLDKLKAERE
Sbjct: 1   WVLDKLKAERE 11



 Score = 22.6 bits (46), Expect = 2.2
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +1

Query: 436 QTREHALLGF 465
           QTREHALL F
Sbjct: 75  QTREHALLAF 84


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score =  125 bits (302), Expect = 2e-31
 Identities = 58/58 (100%), Positives = 58/58 (100%)
 Frame = +3

Query: 261 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 434
           DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG
Sbjct: 1   DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 58



 Score = 22.6 bits (46), Expect = 2.2
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +1

Query: 436 QTREHALLGF 465
           QTREHALL F
Sbjct: 59  QTREHALLAF 68


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 33.1 bits (72), Expect = 0.002
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +3

Query: 300 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 404
           VT +D PGH  FI     G    D  VL+VAA  G
Sbjct: 195 VTFLDTPGHAAFISMRHRGAHITDIVVLVVAADDG 229



 Score = 25.4 bits (53), Expect = 0.32
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 55  KTHINIVVIGHVDSGKST 108
           K H  + ++GHVD GK+T
Sbjct: 143 KRHPIVTIMGHVDHGKTT 160


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 0.73
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +1

Query: 64  INIVVIGHVDSGKST 108
           INI  IGHV  GKST
Sbjct: 43  INIGTIGHVAHGKST 57


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 56  FSLPIFG*SRITNCV*Y 6
           FSLPIFG   I +C+ Y
Sbjct: 57  FSLPIFGTRWIFSCIGY 73


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 285 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 386
           T KYY    D P +  FIKN+   ++ +D   LI
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLI 327


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 285 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 386
           T KYY    D P +  FIKN+   ++ +D   L+
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLV 327


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +1

Query: 145 DKRTIEKFEKEAQEMG 192
           DK+   KFE+EA+++G
Sbjct: 112 DKKYRVKFEEEAKKLG 127


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +1

Query: 145 DKRTIEKFEKEAQEMG 192
           DK+   KFE+EA+++G
Sbjct: 112 DKKFRVKFEEEAKKLG 127


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +1

Query: 145 DKRTIEKFEKEAQEMG 192
           DK+   KFE+EA+++G
Sbjct: 112 DKKYRVKFEEEAKKLG 127


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 248 SSRSAFSLSNTQAYLKDPLPISWASFSN 165
           ++RS F L N    +KD L   ++ F+N
Sbjct: 77  ATRSPFLLLNDPELIKDILIRDFSKFAN 104


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,078
Number of Sequences: 438
Number of extensions: 2543
Number of successful extensions: 21
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)