Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30068
(572 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0223 - 8021040-8021247,8022275-8022367,8022808-8023059,802... 31 0.65
07_01_0801 - 6278119-6278304,6278382-6278474,6278576-6278636,627... 29 2.0
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 29 2.6
09_06_0148 - 21214460-21214561,21214993-21215339,21215428-212155... 29 3.5
05_03_0117 + 8580270-8580677,8581541-8582328,8582412-8582663,858... 29 3.5
12_01_0773 - 7039294-7039422,7039440-7039479,7039557-7039649,703... 28 4.6
12_01_0633 - 5241098-5241283,5241361-5241453,5241555-5241615,524... 28 4.6
11_01_0639 - 5128139-5128159,5128237-5128329,5128431-5128491,512... 28 4.6
09_02_0126 + 4582214-4582453,4582539-4584201,4584244-4584584,458... 28 4.6
05_03_0470 + 14448243-14448482,14448568-14449181,14449508-144501... 28 4.6
03_05_0567 - 25672780-25672965,25673043-25673135,25673237-256732... 28 4.6
11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,249... 27 8.0
06_02_0244 - 13445023-13445400,13445495-13446823 27 8.0
04_04_0819 - 28312667-28313219,28315157-28316430 27 8.0
>02_02_0223 -
8021040-8021247,8022275-8022367,8022808-8023059,
8023143-8023597,8023667-8023983,8024019-8024298,
8024423-8024728,8024762-8025130,8025216-8025455
Length = 839
Score = 31.1 bits (67), Expect = 0.65
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -3
Query: 237 GPRVHAVQDVVEPARHLRAVLLEPVDAECPYGSREAENLRVD-PRRTLGHGLARAGRTC 64
GP A D E H +A+LLE E P+ R N ++ ++ LG+ AR+ C
Sbjct: 565 GPTYFATDDCPEKYEHGKALLLEWALKEAPWEMRRLHNFYMEASKKGLGNITARSPADC 623
>07_01_0801 -
6278119-6278304,6278382-6278474,6278576-6278636,
6278724-6278834,6278915-6279166,6279250-6280367
Length = 606
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -3
Query: 237 GPRVHAVQDVVEPARHLRAVLLEPVDAECPYGSREAENLRVD-PRRTLGHGLARAGRTC 64
GP A D E H +A+L E E P+ R N ++ ++ LG+ +AR+ C
Sbjct: 282 GPTYFATDDCPEKYEHGKALLPEWALKEAPWEMRRLHNFYMEASKKGLGNIIARSPADC 340
>11_06_0767 + 27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 29.1 bits (62), Expect = 2.6
Identities = 19/60 (31%), Positives = 26/60 (43%)
Frame = +3
Query: 69 YGRPGPDRGQAFGVDRLAGFRLLASHTGIRHRQVQEELLADGERVQPRPAQHVPAAHESR 248
Y R PDRG++ G DR +G R L+S + R R + R P+ SR
Sbjct: 1216 YSR-SPDRGRSRGYDRRSGSRSLSSRSRSRSRSWSRSRSRSRSWSRSRSRSRSPSRSRSR 1274
>09_06_0148 -
21214460-21214561,21214993-21215339,21215428-21215538,
21215673-21215835,21215921-21215999,21216110-21216228
Length = 306
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +2
Query: 236 PRVPPPDGPISEGDARSGRRGHGPCQ 313
P PPP P + G R GRR P Q
Sbjct: 201 PAAPPPPPPPARGRRRRGRRQRDPAQ 226
>05_03_0117 +
8580270-8580677,8581541-8582328,8582412-8582663,
8582744-8582854,8582942-8583020,8583104-8583175,
8583253-8583420
Length = 625
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -3
Query: 237 GPRVHAVQDVVEPARHLRAVLLEPVDAECPYGSREAENLRVD-PRRTLGHGLARAGRTC 64
GP A D +E H + +L E E P+ R N ++ ++ LG+ AR+ C
Sbjct: 308 GPTYFATDDCLEKYEHGKTLLPEWALKEAPWEMRRLHNFHMEASKKGLGNITARSPADC 366
>12_01_0773 -
7039294-7039422,7039440-7039479,7039557-7039649,
7039900-7040010,7040091-7040342,7040407-7040903,
7040923-7041777,7041883-7042143,7042183-7042551,
7042637-7042876
Length = 948
Score = 28.3 bits (60), Expect = 4.6
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -3
Query: 237 GPRVHAVQDVVEPARHLRAVLLEPVDAECPYGSREAENLRVD-PRRTLGHGLARAGRTC 64
GP A D E H +A+L E E P+ R N ++ ++ LG+ AR+ C
Sbjct: 650 GPTFFATDDCPEKYEHGKALLPEWALKEAPWEMRRLHNFYMEASKKGLGNITARSPADC 708
>12_01_0633 -
5241098-5241283,5241361-5241453,5241555-5241615,
5241703-5241813,5241960-5242145,5242229-5242590,
5242730-5243152,5243159-5244382,5244468-5244707
Length = 961
Score = 28.3 bits (60), Expect = 4.6
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -3
Query: 237 GPRVHAVQDVVEPARHLRAVLLEPVDAECPYGSREAENLRVD-PRRTLGHGLARAGRTC 64
GP A D E H +A+L E E P+ R N ++ ++ LG+ AR+ C
Sbjct: 659 GPTYFATDDCPEKYEHGKALLPEWALKEAPWEMRRLHNFYMEASKKGLGNITARSPADC 717
>11_01_0639 -
5128139-5128159,5128237-5128329,5128431-5128491,
5128579-5128689,5128770-5129021,5129105-5129440,
5129486-5131140,5131316-5131555
Length = 922
Score = 28.3 bits (60), Expect = 4.6
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -3
Query: 237 GPRVHAVQDVVEPARHLRAVLLEPVDAECPYGSREAENLRVD-PRRTLGHGLARAGRTC 64
GP A D E H +A+L E E P+ R N ++ ++ LG+ AR+ C
Sbjct: 653 GPTYFATDDCPEKYEHGKALLPEWALKEAPWEMRRLHNFYMEASKKGLGNITARSPADC 711
>09_02_0126 +
4582214-4582453,4582539-4584201,4584244-4584584,
4584809-4584999,4585080-4585190,4585278-4585338,
4585610-4585795
Length = 930
Score = 28.3 bits (60), Expect = 4.6
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -3
Query: 237 GPRVHAVQDVVEPARHLRAVLLEPVDAECPYGSREAENLRVD-PRRTLGHGLARAGRTC 64
GP A D E H +A+L E E P+ R N ++ ++ LG+ AR+ C
Sbjct: 684 GPTYFATDDCPEKYEHGKALLPEWALKEAPWEMRRLHNFYMEASKKGLGNITARSPADC 742
>05_03_0470 +
14448243-14448482,14448568-14449181,14449508-14450135,
14450217-14450827,14450911-14451162,14451243-14451353,
14451441-14451501,14451603-14451695,14451773-14451940
Length = 925
Score = 28.3 bits (60), Expect = 4.6
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -3
Query: 237 GPRVHAVQDVVEPARHLRAVLLEPVDAECPYGSREAENLRVD-PRRTLGHGLARAGRTC 64
GP A D E H +A+L E E P+ R N ++ ++ LG+ AR+ C
Sbjct: 607 GPTYFATDDCPEKYEHGKALLPEWALKEAPWEMRRLHNFYMEASKKGLGNITARSPADC 665
>03_05_0567 -
25672780-25672965,25673043-25673135,25673237-25673297,
25673385-25673495,25673640-25673825,25673909-25675287,
25675393-25675776,25675813-25676061,25676147-25676386
Length = 962
Score = 28.3 bits (60), Expect = 4.6
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -3
Query: 237 GPRVHAVQDVVEPARHLRAVLLEPVDAECPYGSREAENLRVD-PRRTLGHGLARAGRTC 64
GP A D E H +A+L E E P+ R N ++ ++ LG+ AR+ C
Sbjct: 660 GPTYFATDDCPEKYEHGKALLPEWALKEAPWEMRRLHNFYMEASKKGLGNITARSPADC 718
>11_01_0334 +
2495275-2495433,2495553-2495661,2496311-2496378,
2496476-2496577,2496853-2497003,2497173-2497222,
2497432-2497557,2497761-2497863,2498104-2498204,
2498540-2498677,2498768-2498911,2499028-2499103,
2499224-2499309,2499432-2499560,2500572-2500674,
2500776-2500843,2500912-2501013,2501432-2501527,
2501723-2501848,2502152-2502254,2502427-2502569,
2503017-2503154,2503248-2503391,2503535-2503610,
2503883-2503968,2504135-2504212,2505180-2505254,
2505362-2505496,2506240-2506272,2507886-2507905,
2508570-2508666,2508899-2509000,2510612-2510725
Length = 1126
Score = 27.5 bits (58), Expect = 8.0
Identities = 21/62 (33%), Positives = 28/62 (45%)
Frame = -3
Query: 240 RGPRVHAVQDVVEPARHLRAVLLEPVDAECPYGSREAENLRVDPRRTLGHGLARAGRTCT 61
RG V +++VEP R +R LLE D P R ++ + LG L R R
Sbjct: 87 RGVDVLTKENIVEPMRDIRRALLE-ADVSLPVVRRFVSSI---SEKALGSDLIRGVRPEQ 142
Query: 60 QL 55
QL
Sbjct: 143 QL 144
>06_02_0244 - 13445023-13445400,13445495-13446823
Length = 568
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/48 (25%), Positives = 22/48 (45%)
Frame = -1
Query: 458 TISIGIVNIELPSNAYCRASGPGSLRAYALARVGVVGLRPLNGREHVG 315
+ IG + + + +N C GP + + ++ V+ LR N H G
Sbjct: 369 SFKIGSLQMFIQNNGSCEDMGPRAFPVKEVHKIAVLDLRLANADRHAG 416
>04_04_0819 - 28312667-28313219,28315157-28316430
Length = 608
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/26 (57%), Positives = 15/26 (57%)
Frame = +3
Query: 174 EELLADGERVQPRPAQHVPAAHESRL 251
EE L D R PRP Q PAAH RL
Sbjct: 478 EEKLED-RRTHPRPPQLPPAAHALRL 502
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,755,659
Number of Sequences: 37544
Number of extensions: 315275
Number of successful extensions: 1123
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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