Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30068
         (572 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.1  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    22   5.0  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   5.0  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    21   6.6  
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    21   8.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   8.7  
AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor p...    21   8.7  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 203 NPLAICEQFFLNLSMPNAR 147
           NP+   E++FLNL++ N R
Sbjct: 403 NPVKGFEEYFLNLTVENNR 421


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 151 PVWLARSRKPASRSTPNAWPRSGPG 77
           PV++++ R P  R    A P + PG
Sbjct: 102 PVYISQPRPPHPRLRREAEPEAEPG 126



 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 151 PVWLARSRKPASRSTPNAWPRSGPG 77
           PV++++ R P  R    A P + PG
Sbjct: 158 PVYISQPRPPHPRLRREAEPEAEPG 182



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 151 PVWLARSRKPASRSTPNAWPRSGPG 77
           PV++ + R P  R    A P + PG
Sbjct: 46  PVYIPQPRPPHPRLRREAEPEAEPG 70



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 151 PVWLARSRKPASRSTPNAWPRSGPG 77
           PV++ + R P  R    A P + PG
Sbjct: 186 PVYIPQPRPPHPRLRREAEPEAEPG 210



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 151 PVWLARSRKPASRSTPNAWPRSGPG 77
           PV++ + R P  R    A P + PG
Sbjct: 214 PVYIPQPRPPHPRLRREAEPEAEPG 238



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 151 PVWLARSRKPASRSTPNAWPRSGPG 77
           PV++ + R P  R    A P + PG
Sbjct: 242 PVYIPQPRPPHPRLRREAKPEAKPG 266


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +1

Query: 436 FTIPMEIVNIICESLLNFTTTTFVVC*MLMIDGFLLCLW 552
           FT  +   NI+     +  +TT+V   ++++   L+ LW
Sbjct: 228 FTTDLLSYNILLRRHYSMNSTTYVTLTIVLMTMTLMTLW 266


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 151 PVWLARSRKPASRSTPNAWPRSGPG 77
           P+++ + R P  R    A P++ PG
Sbjct: 47  PIYIPQPRPPHPRLRREAEPKAEPG 71


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
           protein.
          Length = 144

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 151 PVWLARSRKPASRSTPNAWPRSGPG 77
           PV++ + R P  R    A P + PG
Sbjct: 47  PVYIPQPRPPHPRLRREAEPEAEPG 71



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 151 PVWLARSRKPASRSTPNAWPRSGPG 77
           PV++ + R P  R    A P + PG
Sbjct: 75  PVYIPQPRPPHPRLRREAEPEAEPG 99



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 151 PVWLARSRKPASRSTPNAWPRSGPG 77
           PV++ + R P  R    A P + PG
Sbjct: 103 PVYIPQPRPPHPRLRREAEPEAEPG 127


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 215 CTACTRGPRVPPP 253
           C AC+  PR  PP
Sbjct: 389 CVACSPPPRQTPP 401


>AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor
           protein.
          Length = 199

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 151 PVWLARSRKPASRSTPNAWPRSGPG 77
           PV++ + R P  R    A P + PG
Sbjct: 18  PVYIPQPRPPHPRLRREAEPEAEPG 42



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 151 PVWLARSRKPASRSTPNAWPRSGPG 77
           PV++ + R P  R    A P + PG
Sbjct: 46  PVYIPQPRPPHPRLRREAEPEAEPG 70



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 151 PVWLARSRKPASRSTPNAWPRSGPG 77
           PV++ + R P  R    A P + PG
Sbjct: 74  PVYIPQPRPPHPRLRREAEPEAEPG 98



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 151 PVWLARSRKPASRSTPNAWPRSGPG 77
           PV++ + R P  R    A P + PG
Sbjct: 102 PVYIPQPRPPHPRLRREAEPEAEPG 126



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 151 PVWLARSRKPASRSTPNAWPRSGPG 77
           PV++ + R P  R    A P + PG
Sbjct: 130 PVYIPQPRPPHPRLRREAKPEAEPG 154



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 151 PVWLARSRKPASRSTPNAWPRSGPG 77
           PV++ + R P  R    A P + PG
Sbjct: 158 PVYIPQPRPPHPRLRREAEPEAEPG 182


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,591
Number of Sequences: 438
Number of extensions: 2968
Number of successful extensions: 21
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)