Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30068
(572 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g66652.1 68416.m00776 fip1 motif-containing protein contains ... 30 1.3
At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) / chlorop... 30 1.3
At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) / chlorop... 30 1.3
At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) / chlorop... 30 1.3
At2g40850.1 68415.m05043 phosphatidylinositol 3- and 4-kinase fa... 29 2.2
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 29 2.9
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 29 2.9
At3g56600.1 68416.m06294 phosphatidylinositol 3- and 4-kinase fa... 28 3.8
At1g79190.1 68414.m09233 expressed protein 28 3.8
At1g64460.1 68414.m07308 phosphatidylinositol 3- and 4-kinase fa... 27 8.9
>At3g66652.1 68416.m00776 fip1 motif-containing protein contains
Pfam profile PF05182: Fip1 motif
Length = 980
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +3
Query: 9 YTRNLGYTKVMSVVERVEYRYGRPGPDRGQ 98
+T+NLG + +SV +R++Y GPDRG+
Sbjct: 766 WTQNLGRSHNVSVKDRLQYDADWVGPDRGR 795
>At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 433
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -1
Query: 161 MPNARMAREKPKTCESIHAERLATVWPG--PAVPVLNSL 51
MP+ ++ + K K+ + E + +WPG P P+L SL
Sbjct: 297 MPSTKLLKVKIKSLPCLEQEGMIWIWPGDEPPAPILPSL 335
>At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 511
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -1
Query: 161 MPNARMAREKPKTCESIHAERLATVWPG--PAVPVLNSL 51
MP+ ++ + K K+ + E + +WPG P P+L SL
Sbjct: 297 MPSTKLLKVKIKSLPCLEQEGMIWIWPGDEPPAPILPSL 335
>At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 536
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -1
Query: 161 MPNARMAREKPKTCESIHAERLATVWPG--PAVPVLNSL 51
MP+ ++ + K K+ + E + +WPG P P+L SL
Sbjct: 297 MPSTKLLKVKIKSLPCLEQEGMIWIWPGDEPPAPILPSL 335
>At2g40850.1 68415.m05043 phosphatidylinositol 3- and 4-kinase
family protein contains Pfam profile PF00454:
Phosphatidylinositol 3- and 4-kinase
Length = 561
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 398 GPGSLRAYALARVGVVGLRPLNGREHVG 315
GPGS A ++ R+G++ +R LN H G
Sbjct: 246 GPGSFTATSVHRIGILDVRLLNLDRHAG 273
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 28.7 bits (61), Expect = 2.9
Identities = 21/74 (28%), Positives = 26/74 (35%)
Frame = +2
Query: 71 RPARARPWPSVRRGSTRRFSASREPYGHXXXXXXXXXXXXXXXXXXXXCTACTRGPRVPP 250
+P+R R PSV S+R S SR + + G R PP
Sbjct: 3 KPSRGRRSPSVSGSSSRSSSRSRSGSSPSRSISRSRSRSRSLSSSSSPSRSVSSGSRSPP 62
Query: 251 PDGPISEGDARSGR 292
G G AR GR
Sbjct: 63 RRGKSPAGPARRGR 76
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 28.7 bits (61), Expect = 2.9
Identities = 21/74 (28%), Positives = 26/74 (35%)
Frame = +2
Query: 71 RPARARPWPSVRRGSTRRFSASREPYGHXXXXXXXXXXXXXXXXXXXXCTACTRGPRVPP 250
+P+R R PSV S+R S SR + + G R PP
Sbjct: 3 KPSRGRRSPSVSGSSSRSSSRSRSGSSPSRSISRSRSRSRSLSSSSSPSRSVSSGSRSPP 62
Query: 251 PDGPISEGDARSGR 292
G G AR GR
Sbjct: 63 RRGKSPAGPARRGR 76
>At3g56600.1 68416.m06294 phosphatidylinositol 3- and 4-kinase
family protein low similarity to 55 kDa type II
phosphatidylinositol 4-kinase [Rattus norvegicus]
GI:13660755; contains Pfam profile PF00454:
Phosphatidylinositol 3- and 4-kinase
Length = 533
Score = 28.3 bits (60), Expect = 3.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 398 GPGSLRAYALARVGVVGLRPLNGREHVG 315
GPGS ++ R+G++ +R LN H G
Sbjct: 223 GPGSFTVVSVHRIGILDVRVLNLDRHAG 250
>At1g79190.1 68414.m09233 expressed protein
Length = 1274
Score = 28.3 bits (60), Expect = 3.8
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -3
Query: 216 QDVVEPARHLRAVLLEPVDAECPYGSREAENLRVDPRRTLGHGLARAG 73
Q + H ++LL+ DAE G R + NLRV+ L +A+ G
Sbjct: 218 QSALAAVGHWLSILLKVADAEASRGHRGSANLRVEAFMALRILVAKIG 265
>At1g64460.1 68414.m07308 phosphatidylinositol 3- and 4-kinase
family protein contains Pfam profile PF00454:
Phosphatidylinositol 3- and 4-kinase
Length = 301
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/45 (24%), Positives = 21/45 (46%)
Frame = -1
Query: 449 IGIVNIELPSNAYCRASGPGSLRAYALARVGVVGLRPLNGREHVG 315
+G + + + +N C GPG+ + ++ V +R N H G
Sbjct: 106 VGSLQMFMKNNGSCEDIGPGAFPVEEVHKICVFDIRMANADRHAG 150
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,960,190
Number of Sequences: 28952
Number of extensions: 227764
Number of successful extensions: 602
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -