Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30064
         (858 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0EBK2 Cluster: Chromosome undetermined scaffold_88, wh...    36   0.99 
UniRef50_Q23Q06 Cluster: Putative serine esterase; n=1; Tetrahym...    36   1.3  
UniRef50_A2E4N9 Cluster: Putative uncharacterized protein; n=5; ...    34   4.0  
UniRef50_A5K547 Cluster: Putative uncharacterized protein; n=4; ...    34   5.3  
UniRef50_Q2FNU8 Cluster: Putative PAS/PAC sensor protein; n=1; M...    33   7.0  

>UniRef50_A0EBK2 Cluster: Chromosome undetermined scaffold_88, whole
           genome shotgun sequence; n=3; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_88,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 677

 Score = 36.3 bits (80), Expect = 0.99
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = +2

Query: 191 DHKHRITFSLSNKKRLFRTHFRRYLIQLLYNVKDNS 298
           D+K RI F+   KKR FR HF ++  Q++ N+ D +
Sbjct: 232 DNKDRIQFNYKGKKRCFRFHFMKHHYQIVINLLDET 267


>UniRef50_Q23Q06 Cluster: Putative serine esterase; n=1; Tetrahymena
           thermophila SB210|Rep: Putative serine esterase -
           Tetrahymena thermophila SB210
          Length = 863

 Score = 35.9 bits (79), Expect = 1.3
 Identities = 18/78 (23%), Positives = 41/78 (52%)
 Frame = +2

Query: 95  NNYLYRLLTKANINY*KTNCFTQ*SY*ESKIKDHKHRITFSLSNKKRLFRTHFRRYLIQL 274
           + YLY+L TK  +N+ +   F   S+ +  +     R+  ++ N  +  + + ++Y  Q+
Sbjct: 750 DTYLYKLSTKPGLNWFQNVMFIS-SFDDQYVPIQSARV-LTIPNGSQFLQQYNKKYHNQM 807

Query: 275 LYNVKDNSRCQFYYRIPI 328
           + N+  N +C+  YR+ +
Sbjct: 808 VENISRNFKCENIYRLDV 825


>UniRef50_A2E4N9 Cluster: Putative uncharacterized protein; n=5;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 221

 Score = 34.3 bits (75), Expect = 4.0
 Identities = 17/66 (25%), Positives = 37/66 (56%)
 Frame = +2

Query: 74  NHL*SNINNYLYRLLTKANINY*KTNCFTQ*SY*ESKIKDHKHRITFSLSNKKRLFRTHF 253
           N + ++++  +Y+L+ + N +   TNCF      ++    +K  I + L++ K L + +F
Sbjct: 10  NDVYASLDFKIYKLVFEHNYSVTNTNCFNNVEEAKNISVQNKFSILYDLNSTKYLMKDNF 69

Query: 254 RRYLIQ 271
           R Y+I+
Sbjct: 70  RYYIIE 75


>UniRef50_A5K547 Cluster: Putative uncharacterized protein; n=4;
            Plasmodium|Rep: Putative uncharacterized protein -
            Plasmodium vivax
          Length = 1990

 Score = 33.9 bits (74), Expect = 5.3
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = -2

Query: 722  LENKFKLEPNVYTILHFIKKFGNHGKWIYTHFFQHYSTTVHFKSAV*STHEIYNS 558
            L + F L+PN + + HF+K F    K+ Y  ++ +      FK  + ++ ++YNS
Sbjct: 1870 LPHLFLLKPNSFYLNHFVKNFSGKHKYYYKSYYYNMLDFSTFKDFI-NSIKLYNS 1923


>UniRef50_Q2FNU8 Cluster: Putative PAS/PAC sensor protein; n=1;
           Methanospirillum hungatei JF-1|Rep: Putative PAS/PAC
           sensor protein - Methanospirillum hungatei (strain JF-1
           / DSM 864)
          Length = 849

 Score = 33.5 bits (73), Expect = 7.0
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -2

Query: 758 VGTQIVKWTFWWLENKFKLEPNVYTILHFIKKFGNHGKWIY 636
           V  QI KW +    +  KL P  Y  + F    G HGKW+Y
Sbjct: 650 VPDQIEKW-YAGKYSPSKLIPGAYEAVDFFPSLGTHGKWLY 689


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 777,580,764
Number of Sequences: 1657284
Number of extensions: 15061357
Number of successful extensions: 30286
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 29289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30280
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 75833093035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)