Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30062
         (860 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    22   5.4  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    22   5.4  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    22   7.2  

>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -1

Query: 338 ENTFSKQENLFGYIYNNFNVYLYLYILWSLETFFKQYYF--QTFHIILQIYSFKL 180
           +N  S + NL   +   F VY+ LYI   L T F  Y +  +   + LQ Y+  L
Sbjct: 122 KNRDSHETNLLRNVSVQFFVYVILYI---LATVFLAYVWICEMGVVTLQAYTLHL 173


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -1

Query: 338 ENTFSKQENLFGYIYNNFNVYLYLYILWSLETFFKQYYF--QTFHIILQIYSFKL 180
           +N  S + NL   +   F VY+ LYI   L T F  Y +  +   + LQ Y+  L
Sbjct: 122 KNRDSHETNLLRNVSVQFFVYVILYI---LATVFLAYVWICEMGVVTLQAYTLHL 173


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 818 SAQNFSGSEQPEP 856
           SA N+S S+ PEP
Sbjct: 212 SASNYSPSQSPEP 224


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,394
Number of Sequences: 336
Number of extensions: 3993
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23866870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)