Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30062
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    27   4.5  
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    27   4.5  
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    26   7.9  

>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 303 SK*VLLFAKRIFLKPGNEYTVLFVHVLSGRGGTGRGAAC 419
           +K  LL  KR   + GN  + ++    +  G  G+GAAC
Sbjct: 186 NKSYLLKKKRFLKEVGNSPSAVYCRYYNANGICGKGAAC 224


>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 308 FGYIYNNFNVYLYLYILWSLETF 240
           +GY+Y+  + Y Y Y+ +S+  F
Sbjct: 136 YGYVYDKLDEYGYFYLFFSIALF 158


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 263 ILWSLETFFKQYYFQTFHII 204
           ++W+ E+F K +YF+   II
Sbjct: 178 MVWAFESFLKSFYFKYIQII 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,318,384
Number of Sequences: 5004
Number of extensions: 65178
Number of successful extensions: 121
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)