Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30062
         (860 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.6  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   4.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.8  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.3  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   8.4  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +3

Query: 693 IGWVNYW*SPTRKPMV*NCGFKRILA*ATPH 785
           + WV++W  P   P     G   +L  +T H
Sbjct: 261 MSWVSFWIKPEAAPARVTLGVTSLLTLSTQH 291


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 7/12 (58%), Positives = 12/12 (100%)
 Frame = +2

Query: 68  NVFIIGSRLDYE 103
           N++++GSRLD+E
Sbjct: 678 NIWLLGSRLDWE 689


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +3

Query: 615 IYQHNVTI*LTKIR 656
           IYQHNV   LTK R
Sbjct: 630 IYQHNVASGLTKAR 643


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 45  FRIFSDHKTYLLLGLDSTMNLYR 113
           + +F  H T L+  LDS+   YR
Sbjct: 367 YALFLGHATNLIQSLDSSRRQYR 389


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 45  FRIFSDHKTYLLLGLDSTMNLYR 113
           + +F  H T L+  LDS+   YR
Sbjct: 335 YALFLGHATNLIQSLDSSRRQYR 357


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 565 SSHFLTFINFSPFVEHLY 618
           +SH L ++N  PF++  Y
Sbjct: 272 TSHSLYYVNMEPFMKSQY 289


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,271
Number of Sequences: 438
Number of extensions: 4608
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)