BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30060 (824 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 28 1.8 SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 27 2.4 SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 27 4.3 SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 27 4.3 SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3... 26 7.5 SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 25 9.9 SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ... 25 9.9 SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 9.9 SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.9 >SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces pombe|chr 2|||Manual Length = 3699 Score = 27.9 bits (59), Expect = 1.8 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 9/88 (10%) Frame = +1 Query: 547 IQENANVSRPLTLPSVRANAF-----VPIVEARSLYLMGEARTL----EPRPRKVNLKVV 699 I A+V+R LPSV N +P +E + + + L PR K L+VV Sbjct: 2877 INRFAHVARKHKLPSVCLNQLTKIYTLPNIEIQEAFYKLREQVLCYLQNPRDLKTGLEVV 2936 Query: 700 LGRPVLKRPLKRTTKFLPPRGKFLKAQN 783 ++ ++ ++F+ +GKFL+ N Sbjct: 2937 TNTNLMYFNSRQKSEFVTLKGKFLEKLN 2964 >SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizosaccharomyces pombe|chr 1|||Manual Length = 927 Score = 27.5 bits (58), Expect = 2.4 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 6/65 (9%) Frame = +2 Query: 104 AQEDRSSNCSSRK--GY----PRR*RIHRYNGKAFAGHRRGEHRGEPSSLSPTPIQPDAV 265 +Q+ SSN S+R GY P HRY + R+ R + SP P ++V Sbjct: 790 SQKSTSSNTSNRNNGGYSGSRPSSEMGHRYGSMSGRSMRQVSQRSTSRARSPEPTNRNSV 849 Query: 266 LSENI 280 S+N+ Sbjct: 850 QSKNV 854 >SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pombe|chr 2|||Manual Length = 963 Score = 26.6 bits (56), Expect = 4.3 Identities = 16/55 (29%), Positives = 27/55 (49%) Frame = +3 Query: 81 PTPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQL 245 P PE ++E K+A++ P K +A ES K +++ + + N YR L Sbjct: 477 PKPEAKKEASKVAESTKIPKKQHTSAYESRAPQSKVPENL--KESHVNETPYRGL 529 >SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 735 Score = 26.6 bits (56), Expect = 4.3 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%) Frame = +2 Query: 275 NISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSEDECT-TQGLDDL 451 NI GV+ + ++ + + L +L EK G I GSE + T+ D+ Sbjct: 357 NIVGVVATLSSSSEENSEASNLSTLFEKSGNFEEI---------LGSESHSSITEKTRDI 407 Query: 452 AQRCAQYKKDGCHFAKW 502 A+ A + K+G +F+ W Sbjct: 408 AKNVATWLKNGENFSSW 424 >SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual Length = 455 Score = 25.8 bits (54), Expect = 7.5 Identities = 19/57 (33%), Positives = 27/57 (47%) Frame = +2 Query: 119 SSNCSSRKGYPRR*RIHRYNGKAFAGHRRGEHRGEPSSLSPTPIQPDAVLSENISGV 289 + + SSRK Y R I +Y FA R P+S + P++ AV S + S V Sbjct: 25 AEDLSSRKTYARPVLIRQYRSLRFANKEENICRLTPNS-AFVPVRDSAVASISTSKV 80 >SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr 2|||Manual Length = 905 Score = 25.4 bits (53), Expect = 9.9 Identities = 10/36 (27%), Positives = 23/36 (63%) Frame = +2 Query: 350 LEKKGIIPGIKVDKGVVPLFGSEDECTTQGLDDLAQ 457 L+K+G++P V++ +ED+ +T+G++ L + Sbjct: 703 LKKQGVLPLTFVNEADYEKIDAEDKVSTRGIEQLLE 738 >SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A |Schizosaccharomyces pombe|chr 1|||Manual Length = 450 Score = 25.4 bits (53), Expect = 9.9 Identities = 11/48 (22%), Positives = 22/48 (45%) Frame = +1 Query: 433 PGSGRPRPALRPVQEGRLPLRQVALLLKIGRNTPSYQAIQENANVSRP 576 PG+ RP+ PV + + ++ L + YQ + +N ++ P Sbjct: 8 PGTPVQRPSAGPVNQAQFSQQRTNQLTSLLHTMTMYQQLAQNVGLNTP 55 >SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 2609 Score = 25.4 bits (53), Expect = 9.9 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%) Frame = +2 Query: 212 HRGEPSSLSPTPIQPDAVLSENISGVILFHETLYQKADD--GTPLVSLL 352 ++ PS+L+P + DA++SEN Y+ D PLV LL Sbjct: 530 NQSTPSTLAPNVAETDALVSENTGAASQKTSKSYKTNDSLKVPPLVPLL 578 >SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 262 Score = 25.4 bits (53), Expect = 9.9 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = +1 Query: 541 QAIQENANVSRPLTLPSVRANAFVPIVEAR 630 Q Q NAN + LP+ ANA +P+ R Sbjct: 165 QTYQSNANYTASSPLPTASANAPLPVPPPR 194 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,590,163 Number of Sequences: 5004 Number of extensions: 79295 Number of successful extensions: 179 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 173 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 179 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 404442380 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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