Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30055
         (803 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    22   6.6  
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    22   6.6  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    22   6.6  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   8.7  

>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +1

Query: 499 TLSSGYFKAHMK-FPPDYPYSP 561
           T++ G F   ++ FPP YP+ P
Sbjct: 193 TIALGAFYQPLQPFPPPYPFYP 214


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 347 TLSVMYLFNLHYL 309
           TL V+Y FNL YL
Sbjct: 312 TLVVIYTFNLFYL 324


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 347 TLSVMYLFNLHYL 309
           TL V+Y FNL YL
Sbjct: 268 TLVVIYTFNLFYL 280


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +2

Query: 230 VTS*NAWWNVDSIKS 274
           VTS NAWW+V S  S
Sbjct: 184 VTS-NAWWDVHSTGS 197


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,253
Number of Sequences: 336
Number of extensions: 5258
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21895259
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)