Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30049
(727 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 98 6e-21
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 96 2e-20
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 95 6e-20
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 94 1e-19
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 82 4e-16
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 61 8e-10
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 61 8e-10
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 61 8e-10
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 60 2e-09
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 60 2e-09
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 55 6e-08
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 52 5e-07
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 52 5e-07
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 52 5e-07
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 48 6e-06
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 48 8e-06
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 46 3e-05
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 46 3e-05
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 45 4e-05
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 45 4e-05
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 45 6e-05
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 44 8e-05
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 44 8e-05
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 44 1e-04
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 44 1e-04
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 44 1e-04
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 44 1e-04
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 44 1e-04
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 44 1e-04
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 43 2e-04
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 42 3e-04
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 42 3e-04
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 42 3e-04
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 42 3e-04
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 42 3e-04
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 42 3e-04
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 42 3e-04
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 40 0.001
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 40 0.001
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 40 0.002
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 39 0.003
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 39 0.003
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 39 0.004
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 38 0.005
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 38 0.005
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 38 0.007
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 38 0.009
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 38 0.009
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 37 0.012
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 37 0.012
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 37 0.012
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 36 0.021
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 36 0.021
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 36 0.021
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 34 0.083
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 34 0.11
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 32 0.34
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 32 0.34
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 32 0.45
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 32 0.45
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 31 0.59
At3g49970.1 68416.m05464 phototropic-responsive protein, putativ... 30 1.4
At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containi... 30 1.4
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 29 2.4
At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger) fa... 29 3.1
At2g04620.1 68415.m00470 cation efflux family protein potential ... 29 3.1
At4g24430.1 68417.m03502 expressed protein 29 4.1
At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containi... 29 4.1
At5g18910.1 68418.m02246 protein kinase family protein contains ... 28 5.5
At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger) fa... 28 5.5
At3g53720.1 68416.m05934 cation/hydrogen exchanger, putative (CH... 28 7.2
At1g01950.1 68414.m00113 armadillo/beta-catenin repeat family pr... 28 7.2
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 27 9.6
At4g26510.2 68417.m03818 uracil phosphoribosyltransferase / UMP ... 27 9.6
At4g26510.1 68417.m03817 uracil phosphoribosyltransferase / UMP ... 27 9.6
At1g76010.1 68414.m08825 expressed protein 27 9.6
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 97.9 bits (233), Expect = 6e-21
Identities = 45/67 (67%), Positives = 56/67 (83%)
Frame = +2
Query: 254 KTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVR 433
KTATF +LQQ+D S+ +CQAL+LAPTRELAQQI+KV+ ALGD+L K HAC+GGT+VR
Sbjct: 89 KTATFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVR 148
Query: 434 EDIRQLE 454
ED R L+
Sbjct: 149 EDQRILQ 155
Score = 88.2 bits (209), Expect = 5e-18
Identities = 42/58 (72%), Positives = 47/58 (81%)
Frame = +3
Query: 84 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGK 257
T +D V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+P +G DVI QAQSGTGK
Sbjct: 32 TSYDDVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGK 89
Score = 35.5 bits (78), Expect = 0.036
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = +1
Query: 487 GRVYDMIIVVRFHANTIKLFVLDEADE 567
GRV+DM+ A+ IK+FVLDEADE
Sbjct: 166 GRVFDMLKRQSLRADNIKMFVLDEADE 192
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 95.9 bits (228), Expect = 2e-20
Identities = 44/67 (65%), Positives = 55/67 (82%)
Frame = +2
Query: 254 KTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVR 433
KTATF +LQQ+D S+ +CQAL+LAPTRELAQQI+KV+ ALGD+L K AC+GGT+VR
Sbjct: 91 KTATFCSGVLQQLDISLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVR 150
Query: 434 EDIRQLE 454
ED R L+
Sbjct: 151 EDQRVLQ 157
Score = 88.2 bits (209), Expect = 5e-18
Identities = 40/59 (67%), Positives = 50/59 (84%)
Frame = +3
Query: 81 HTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGK 257
+T++D+V ++FD M L+ +LLRGIYAYGFEKPSAIQQR I+P +G DVI QAQSGTGK
Sbjct: 33 YTNYDEVCDSFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGK 91
Score = 34.3 bits (75), Expect = 0.083
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = +1
Query: 487 GRVYDMIIVVRFHANTIKLFVLDEADE 567
GRV+D++ A+ IK+FVLDEADE
Sbjct: 168 GRVFDLLRRQSLRADAIKMFVLDEADE 194
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 94.7 bits (225), Expect = 6e-20
Identities = 43/67 (64%), Positives = 55/67 (82%)
Frame = +2
Query: 254 KTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVR 433
KTATF +LQQ+D ++ +CQAL+LAPTRELAQQI+KV+ ALGD+ K HAC+GGT+VR
Sbjct: 89 KTATFCSGVLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVR 148
Query: 434 EDIRQLE 454
ED R L+
Sbjct: 149 EDQRILQ 155
Score = 89.0 bits (211), Expect = 3e-18
Identities = 42/58 (72%), Positives = 48/58 (82%)
Frame = +3
Query: 84 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGK 257
T +D+V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+P +G DVI QAQSGTGK
Sbjct: 32 TSYDEVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGK 89
Score = 33.1 bits (72), Expect = 0.19
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +1
Query: 487 GRVYDMIIVVRFHANTIKLFVLDEADE 567
GRV+DM+ + IK+FVLDEADE
Sbjct: 166 GRVFDMLRRQSLRPDCIKMFVLDEADE 192
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 93.9 bits (223), Expect = 1e-19
Identities = 41/58 (70%), Positives = 51/58 (87%)
Frame = +3
Query: 84 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGK 257
TD + + +F+DM +KE++LRG+Y YGFEKPSAIQQRA+MP +QGRDVIAQAQSGTGK
Sbjct: 28 TDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGK 85
Score = 84.6 bits (200), Expect = 6e-17
Identities = 39/67 (58%), Positives = 51/67 (76%)
Frame = +2
Query: 254 KTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVR 433
KT+ ++S+ Q +DTS RE QALIL+PTRELA Q +K + A+G H N + HACIGG +V
Sbjct: 85 KTSMIALSVCQVVDTSSREVQALILSPTRELATQTEKTIQAIGLHANIQAHACIGGNSVG 144
Query: 434 EDIRQLE 454
EDIR+LE
Sbjct: 145 EDIRKLE 151
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +1
Query: 487 GRVYDMIIVVRFHANTIKLFVLDEADE 567
GRV DMI IKL +LDE+DE
Sbjct: 162 GRVCDMIKRRSLRTRAIKLLILDESDE 188
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 81.8 bits (193), Expect = 4e-16
Identities = 33/52 (63%), Positives = 47/52 (90%)
Frame = +3
Query: 102 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGK 257
+++FDDM + +++LRG+Y YG++KPS IQQRA++P ++GRDVIAQAQSGTGK
Sbjct: 21 IKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGK 72
Score = 74.5 bits (175), Expect = 6e-14
Identities = 32/67 (47%), Positives = 49/67 (73%)
Frame = +2
Query: 254 KTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVR 433
KT+ +IS+ Q ++ S R+ Q L+L+P+RELA Q +K + A+G H N + HACIGG ++
Sbjct: 72 KTSMIAISVCQIVNISSRKVQVLVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIG 131
Query: 434 EDIRQLE 454
EDI++LE
Sbjct: 132 EDIKKLE 138
Score = 32.3 bits (70), Expect = 0.34
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +1
Query: 487 GRVYDMIIVVRFHANTIKLFVLDEADE 567
GRVYDMI +KL VLDE+DE
Sbjct: 149 GRVYDMIKRGSLQTKAVKLLVLDESDE 175
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 60.9 bits (141), Expect = 8e-10
Identities = 27/49 (55%), Positives = 37/49 (75%)
Frame = +3
Query: 111 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGK 257
F+D LK ELL GIY GFE+PS IQ+ +I + GRD++A+A++GTGK
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
Score = 58.8 bits (136), Expect = 3e-09
Identities = 29/66 (43%), Positives = 41/66 (62%)
Frame = +2
Query: 254 KTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVR 433
KTA F I +L++ID QA+I+ PTRELA Q +V LG HL + GGT+++
Sbjct: 181 KTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLK 240
Query: 434 EDIRQL 451
+DI +L
Sbjct: 241 DDIMRL 246
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 60.9 bits (141), Expect = 8e-10
Identities = 27/49 (55%), Positives = 37/49 (75%)
Frame = +3
Query: 111 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGK 257
F+D LK ELL GIY GFE+PS IQ+ +I + GRD++A+A++GTGK
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
Score = 58.8 bits (136), Expect = 3e-09
Identities = 29/66 (43%), Positives = 41/66 (62%)
Frame = +2
Query: 254 KTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVR 433
KTA F I +L++ID QA+I+ PTRELA Q +V LG HL + GGT+++
Sbjct: 181 KTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLK 240
Query: 434 EDIRQL 451
+DI +L
Sbjct: 241 DDIMRL 246
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 60.9 bits (141), Expect = 8e-10
Identities = 27/49 (55%), Positives = 37/49 (75%)
Frame = +3
Query: 111 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGK 257
F+D LK +LLRGIY GFEKPS IQ+ +I + G D++A+A++GTGK
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 204
Score = 52.8 bits (121), Expect = 2e-07
Identities = 28/66 (42%), Positives = 38/66 (57%)
Frame = +2
Query: 254 KTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVR 433
KT F I L++ID QA+IL PTRELA Q +V L +L + GGT++R
Sbjct: 204 KTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLR 263
Query: 434 EDIRQL 451
+DI +L
Sbjct: 264 DDIMRL 269
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 59.7 bits (138), Expect = 2e-09
Identities = 26/49 (53%), Positives = 37/49 (75%)
Frame = +3
Query: 111 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGK 257
F+D LK +LL+GIY GFEKPS IQ+ +I + G D++A+A++GTGK
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
Score = 57.6 bits (133), Expect = 8e-09
Identities = 29/66 (43%), Positives = 41/66 (62%)
Frame = +2
Query: 254 KTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVR 433
KT F I +L++ID + QA+IL PTRELA Q +V L +LN + GGT++R
Sbjct: 174 KTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLR 233
Query: 434 EDIRQL 451
+DI +L
Sbjct: 234 DDIMRL 239
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 59.7 bits (138), Expect = 2e-09
Identities = 26/49 (53%), Positives = 37/49 (75%)
Frame = +3
Query: 111 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGK 257
F+D LK +LL+GIY GFEKPS IQ+ +I + G D++A+A++GTGK
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
Score = 57.6 bits (133), Expect = 8e-09
Identities = 29/66 (43%), Positives = 41/66 (62%)
Frame = +2
Query: 254 KTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVR 433
KT F I +L++ID + QA+IL PTRELA Q +V L +LN + GGT++R
Sbjct: 174 KTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLR 233
Query: 434 EDIRQL 451
+DI +L
Sbjct: 234 DDIMRL 239
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 54.8 bits (126), Expect = 6e-08
Identities = 25/70 (35%), Positives = 43/70 (61%)
Frame = +3
Query: 93 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKLLLSL 272
++ ++F+++ L L+R + G EKP+ IQQ AI ++G+DV+A+A++G+GK L L
Sbjct: 42 EEAPKSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYL 101
Query: 273 YRFYNKSIQA 302
K A
Sbjct: 102 LPLLQKLFSA 111
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 51.6 bits (118), Expect = 5e-07
Identities = 22/55 (40%), Positives = 39/55 (70%)
Frame = +3
Query: 93 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGK 257
++VV+TF ++ ++EEL++ G++ PS IQ A+ ++G+DVI AQ+G+GK
Sbjct: 5 NEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGK 59
Score = 35.1 bits (77), Expect = 0.048
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +2
Query: 317 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 421
A +L+PTRELA QI + ALG ++ +C +GG
Sbjct: 92 ACVLSPTRELAIQIAEQFEALGADISLRCAVLVGG 126
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 51.6 bits (118), Expect = 5e-07
Identities = 27/49 (55%), Positives = 29/49 (59%)
Frame = +3
Query: 111 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGK 257
F D LK ELLR I GFE PS +Q I I G DVI QA+SG GK
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGK 96
Score = 44.4 bits (100), Expect = 8e-05
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +2
Query: 254 KTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNV 430
KTA F +S LQQI+ S + AL+L TRELA QI + +L + K GG N+
Sbjct: 96 KTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNI 155
Query: 431 R 433
+
Sbjct: 156 K 156
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 51.6 bits (118), Expect = 5e-07
Identities = 27/49 (55%), Positives = 29/49 (59%)
Frame = +3
Query: 111 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGK 257
F D LK ELLR I GFE PS +Q I I G DVI QA+SG GK
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGK 96
Score = 44.4 bits (100), Expect = 8e-05
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +2
Query: 254 KTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNV 430
KTA F +S LQQI+ S + AL+L TRELA QI + +L + K GG N+
Sbjct: 96 KTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNI 155
Query: 431 R 433
+
Sbjct: 156 K 156
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 48.0 bits (109), Expect = 6e-06
Identities = 22/57 (38%), Positives = 36/57 (63%)
Frame = +3
Query: 87 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGK 257
D + V+TF+D +++ I +EKP+AIQ +A+ + GRDVI A++G+GK
Sbjct: 222 DVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGK 278
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 47.6 bits (108), Expect = 8e-06
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Frame = +3
Query: 21 GHRRIKVVTMDLREWTLGHLHTDWDQVV----ETFDDMNLKEELLRGIYAYGFEKPSAIQ 188
G RR V T D+ +W + D + +TF ++ E++++ + F++P+ IQ
Sbjct: 342 GDRRSVVYTRDMDDWRERNKTKDTRETGFFSRKTFAEIGCSEDMMKALKEQNFDRPAHIQ 401
Query: 189 QRAIMPCIQGRDVIAQAQSGTGKLLLSL 272
A P I G+ I QSG+GK L L
Sbjct: 402 AMAFSPVIDGKSCIIADQSGSGKTLAYL 429
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 46.0 bits (104), Expect = 3e-05
Identities = 23/59 (38%), Positives = 35/59 (59%)
Frame = +2
Query: 254 KTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 430
KTA F++ IL ++ AL++ PTRELA Q+ + ALG LN +C +GG ++
Sbjct: 108 KTAAFALPILHRLAEDPYGVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDM 166
Score = 36.7 bits (81), Expect = 0.016
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +3
Query: 111 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGK 257
F+ + L E + G KP+ +Q + + GRDV+ AQ+G+GK
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGK 108
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/55 (38%), Positives = 34/55 (61%)
Frame = +3
Query: 108 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKLLLSL 272
TFD ++L E+ I GF+ + IQ +I P ++G+DV+ A++G+GK L L
Sbjct: 90 TFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFL 144
Score = 31.1 bits (67), Expect = 0.78
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 320 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQL 451
+++ PTRELA Q + V L H + IGG N R + +++
Sbjct: 165 IVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQRI 208
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 45.2 bits (102), Expect = 4e-05
Identities = 20/56 (35%), Positives = 34/56 (60%)
Frame = +3
Query: 105 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKLLLSL 272
+TF+ ++L + + I GF + + IQ +AI P + G DV+ A++G+GK L L
Sbjct: 154 KTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFL 209
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/51 (41%), Positives = 31/51 (60%)
Frame = +3
Query: 105 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGK 257
+TF ++NL LLR G++KP+ IQ I + GRD+ A A +G+GK
Sbjct: 167 DTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGK 217
Score = 45.2 bits (102), Expect = 4e-05
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Frame = +2
Query: 203 ALHPRTRCYRSSPVRNWKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVI 373
AL R C S+ + KTA F++ L+++ + + LIL PTRELA QI ++
Sbjct: 201 ALTGRDLC-ASAITGSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQ 259
Query: 374 ALGDHLNAKCHACIGGTNVRE 436
L + KC +GG +VRE
Sbjct: 260 NLAQFTDIKCGLIVGGLSVRE 280
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 44.8 bits (101), Expect = 6e-05
Identities = 21/52 (40%), Positives = 34/52 (65%)
Frame = +3
Query: 102 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGK 257
+ ++++ L ELL+ + G++KPS IQ AI +Q RDVI A++G+GK
Sbjct: 312 MRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGK 363
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/40 (37%), Positives = 27/40 (67%)
Frame = +2
Query: 317 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVRE 436
A+++APTRELAQQI++ + +L + + +GG ++ E
Sbjct: 392 AVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEE 431
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 44.4 bits (100), Expect = 8e-05
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +2
Query: 254 KTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNV 430
KTA F +S LQQI+ S + AL+L TRELA QI + +L + K GG N+
Sbjct: 13 KTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNI 72
Query: 431 R 433
+
Sbjct: 73 K 73
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 44.4 bits (100), Expect = 8e-05
Identities = 18/49 (36%), Positives = 32/49 (65%)
Frame = +3
Query: 117 DMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKLL 263
D+ + E+++ + G EK IQ+ + P ++GRD+I +A++GTGK L
Sbjct: 120 DLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTL 168
Score = 36.7 bits (81), Expect = 0.016
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +2
Query: 314 QALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQL 451
Q L+LAPTRELA+Q++K L+ C GGT + + +R+L
Sbjct: 192 QCLVLAPTRELARQVEKEFRESAPSLDTIC--LYGGTPIGQQMREL 235
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/52 (38%), Positives = 32/52 (61%)
Frame = +3
Query: 108 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKLL 263
TF+ L E+LR + + GF P+ IQ + +Q RD++A A++G+GK L
Sbjct: 436 TFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTL 487
Score = 37.1 bits (82), Expect = 0.012
Identities = 19/45 (42%), Positives = 23/45 (51%)
Frame = +2
Query: 320 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 454
LILAPTRELA QIQ + G C GG +++LE
Sbjct: 511 LILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELE 555
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/62 (33%), Positives = 35/62 (56%)
Frame = +3
Query: 87 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKLLL 266
D + ++ F D N + +L I GF +P+ IQ + ++GRD+I A++G+GK L
Sbjct: 159 DVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 218
Query: 267 SL 272
L
Sbjct: 219 YL 220
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/44 (43%), Positives = 21/44 (47%)
Frame = +2
Query: 320 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQL 451
LILAPTRELA QIQ+ G + GG IR L
Sbjct: 242 LILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDL 285
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/62 (33%), Positives = 35/62 (56%)
Frame = +3
Query: 87 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKLLL 266
D + ++ F D N + +L I GF +P+ IQ + ++GRD+I A++G+GK L
Sbjct: 159 DVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 218
Query: 267 SL 272
L
Sbjct: 219 YL 220
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/44 (43%), Positives = 21/44 (47%)
Frame = +2
Query: 320 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQL 451
LILAPTRELA QIQ+ G + GG IR L
Sbjct: 242 LILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDL 285
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/52 (38%), Positives = 33/52 (63%)
Frame = +3
Query: 108 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKLL 263
+F+ ELLR + + GF P+ IQ ++ +QGRD++A A++G+GK L
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTL 210
Score = 37.1 bits (82), Expect = 0.012
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = +2
Query: 320 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 454
L+L+PTRELA QIQ+ + G C GG +R LE
Sbjct: 234 LVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLE 278
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/52 (38%), Positives = 33/52 (63%)
Frame = +3
Query: 108 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKLL 263
+F+ ELLR + + GF P+ IQ ++ +QGRD++A A++G+GK L
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTL 210
Score = 37.1 bits (82), Expect = 0.012
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = +2
Query: 320 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 454
L+L+PTRELA QIQ+ + G C GG +R LE
Sbjct: 234 LVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLE 278
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/52 (38%), Positives = 33/52 (63%)
Frame = +3
Query: 108 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKLL 263
+F+ ELLR + + GF P+ IQ ++ +QGRD++A A++G+GK L
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTL 210
Score = 37.1 bits (82), Expect = 0.012
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = +2
Query: 320 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 454
L+L+PTRELA QIQ+ + G C GG +R LE
Sbjct: 234 LVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLE 278
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/49 (34%), Positives = 33/49 (67%)
Frame = +3
Query: 117 DMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKLL 263
++ + E+++ + + G EK IQ+ + P ++GRD+I +A++GTGK L
Sbjct: 108 ELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTL 156
Score = 36.7 bits (81), Expect = 0.016
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = +2
Query: 320 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 454
L+LAPTRELA+Q++K L+ C GGT + + +RQL+
Sbjct: 182 LVLAPTRELARQVEKEFRESAPSLDTIC--LYGGTPIGQQMRQLD 224
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/54 (35%), Positives = 33/54 (61%)
Frame = +3
Query: 111 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKLLLSL 272
FD L L+GI GF+ + +Q+ + +QG+D++A+A++GTGK + L
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFL 135
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Frame = +3
Query: 75 HLHTDWDQVVET-FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGT 251
H+ T + +T FD L L+ I GFE + +Q+ + +QG+DV+A+A++GT
Sbjct: 371 HVKTSDSYLSKTRFDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGT 430
Query: 252 GKLLLSL 272
GK + L
Sbjct: 431 GKTVAFL 437
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 42.3 bits (95), Expect = 3e-04
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Frame = +3
Query: 12 PKMGHRRIKVVTMDL--REWTLGHLHTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAI 185
P + R++ MDL ++W + D ++ F DM LLR + G P+ I
Sbjct: 64 PPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPI 123
Query: 186 QQRAIMPCIQGRDVIAQAQSGTGKLLL 266
Q + + + GRD+I A +G+GK L+
Sbjct: 124 QVQGLPVVLSGRDMIGIAFTGSGKTLV 150
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/43 (44%), Positives = 29/43 (67%)
Frame = +2
Query: 254 KTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 382
KT F + +L ++D ++RE QAL + PTRELA Q +V+ +G
Sbjct: 144 KTTCFVLGMLSRVDPTLREPQALCICPTRELANQNMEVLQKMG 186
Score = 41.5 bits (93), Expect = 6e-04
Identities = 24/53 (45%), Positives = 35/53 (66%), Gaps = 4/53 (7%)
Frame = +3
Query: 111 FDDMNLKEELLRGIYA-YGFEKPSAIQQRAIMPCIQ---GRDVIAQAQSGTGK 257
F+D+NL EL++G+Y FEKPS IQ + +P I + +IAQA +G+GK
Sbjct: 93 FEDLNLSPELMKGLYVEMKFEKPSKIQAIS-LPMIMTPPHKHLIAQAHNGSGK 144
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/52 (40%), Positives = 34/52 (65%)
Frame = +3
Query: 102 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGK 257
V TF +++L E L I + KP+ +Q+ AI ++GRD++A AQ+G+GK
Sbjct: 158 VNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGK 209
Score = 36.3 bits (80), Expect = 0.021
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +2
Query: 317 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 454
A+IL+PTRELA QI K GGT + + +R+LE
Sbjct: 240 AVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELE 285
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Frame = +2
Query: 254 KTATFSISILQQIDTSIRE--CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 427
KTA F I +L+++ + + +ALIL+PTR+LA+Q K LG + + +GG +
Sbjct: 78 KTAAFLIPMLEKLKQHVPQGGVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDS 137
Query: 428 VREDIRQL 451
+ + +L
Sbjct: 138 MEDQFEEL 145
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/49 (32%), Positives = 30/49 (61%)
Frame = +3
Query: 111 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGK 257
F+ +NL + I G++ P+ IQ++ + + G DV+A A++G+GK
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGK 78
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/56 (32%), Positives = 33/56 (58%)
Frame = +3
Query: 105 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKLLLSL 272
++F+++ L + LL + GF P+ +Q A+ I+G D + Q+ +G+GK L L
Sbjct: 110 KSFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYL 165
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 308 ECQALILAPTRELAQQI-QKVVIALGDHLNAKCHACIGGTN 427
E QA+I+AP+REL QI ++V LG +GG N
Sbjct: 191 EIQAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGGAN 231
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/48 (37%), Positives = 30/48 (62%)
Frame = +3
Query: 120 MNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKLL 263
++L + L + G IQ+ ++P +QGRD+IA+A++GTGK L
Sbjct: 107 LSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTL 154
Score = 31.9 bits (69), Expect = 0.45
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +2
Query: 320 LILAPTRELAQQIQKVVIALGDHLNAKC 403
L+LAPTRELA+Q++K + +L+ C
Sbjct: 184 LVLAPTRELAKQVEKEIKESAPYLSTVC 211
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/52 (40%), Positives = 32/52 (61%)
Frame = +3
Query: 102 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGK 257
V TF +++L E L I + KP+ +Q+ AI GRD++A AQ+G+GK
Sbjct: 145 VNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGK 196
Score = 36.3 bits (80), Expect = 0.021
Identities = 20/46 (43%), Positives = 24/46 (52%)
Frame = +2
Query: 317 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 454
A+IL+PTRELA QI K GGT V + IR+LE
Sbjct: 227 AVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELE 272
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/59 (32%), Positives = 35/59 (59%)
Frame = +3
Query: 87 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKLL 263
D + V++F D+ + +L + GF +P+ IQ + ++GRD+I A++G+GK L
Sbjct: 93 DIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTL 151
Score = 33.9 bits (74), Expect = 0.11
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = +2
Query: 320 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 454
L+LAPTRELA QIQ+ G K GG +R L+
Sbjct: 176 LVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQ 220
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +3
Query: 111 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI-MPCIQGRDVIAQAQSGTGKLL 263
+ M L L++ IY F++P+ IQ+ + QG+DVI A++G+GK L
Sbjct: 192 WSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTL 243
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +2
Query: 314 QALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 454
+ALI+ PTRELA Q+ + + +L+ K +GG + R+L+
Sbjct: 281 RALIITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLK 327
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +3
Query: 162 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKLLLSL 272
GFE P+ +Q +AI + GRDV+ A +GTGK + L
Sbjct: 49 GFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYL 85
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +3
Query: 111 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKLLLSL 272
FD+ + L+ + A G K + +Q + C+ G+D + +A++GTGK + L
Sbjct: 377 FDESCISPLTLKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFL 430
Score = 33.1 bits (72), Expect = 0.19
Identities = 22/46 (47%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 320 LILAPTRELAQQIQKVVIA-LGDHLNAKCHACIGGTNVREDIRQLE 454
LIL PTRELA QI A L +H IGGT R D ++LE
Sbjct: 456 LILCPTRELASQIAAEGKALLKNHDGIGVQTLIGGTRFRLDQQRLE 501
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = +3
Query: 144 RGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKLL 263
R +Y+ GF PS IQ ++ +Q RD++A A++G+GK L
Sbjct: 242 RMVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTL 281
Score = 34.7 bits (76), Expect = 0.063
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +2
Query: 320 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 454
L+L+PTRELA QIQ + G C GG ++++E
Sbjct: 305 LVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIE 349
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +3
Query: 111 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKLLLSL 272
FD+ + L+ + A G K + +Q + C+ G+D + +A++GTGK + L
Sbjct: 330 FDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFL 383
Score = 32.3 bits (70), Expect = 0.34
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = +2
Query: 317 ALILAPTRELAQQIQ---KVVIALGDHLNAKCHACIGGTNVREDIRQLE 454
ALIL PTRELA QI K ++ D + + IGGT + D ++LE
Sbjct: 408 ALILCPTRELASQIAAEGKALLKFHDGIGVQ--TLIGGTRFKLDQQRLE 454
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/54 (33%), Positives = 32/54 (59%)
Frame = +3
Query: 111 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKLLLSL 272
FD L L+ I G+E + +Q+ + ++G+DV+A+A++GTGK + L
Sbjct: 56 FDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFL 109
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 37.5 bits (83), Expect = 0.009
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Frame = +3
Query: 132 EELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGK------LLLSLYRFYNKS 293
E +L + GF P+ IQ+ A+ GRD I AQ+G+GK L+ SL S
Sbjct: 85 EHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQRSS 144
Query: 294 IQAFVNV 314
+QA + V
Sbjct: 145 VQAVIVV 151
Score = 34.3 bits (75), Expect = 0.083
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +2
Query: 224 CYRSSPVRNWKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKV 367
C + + KT T+ + I I+ QA+I+ PTREL Q+ KV
Sbjct: 116 CILHAQTGSGKTLTYLLLIFSLINPQRSSVQAVIVVPTRELGMQVTKV 163
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 37.5 bits (83), Expect = 0.009
Identities = 22/54 (40%), Positives = 31/54 (57%)
Frame = +3
Query: 102 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKLL 263
++TF + NL E +L FEKPS IQ + GRD+I A++G+GK L
Sbjct: 115 LKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTL 166
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +2
Query: 320 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 427
L+L+PTRELA QI V+ G+ K GG++
Sbjct: 195 LVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSS 230
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 37.1 bits (82), Expect = 0.012
Identities = 19/52 (36%), Positives = 32/52 (61%)
Frame = +3
Query: 102 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGK 257
V TF D++L + L I + +P+ +Q+ AI + RD++A AQ+G+GK
Sbjct: 150 VNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGK 201
Score = 35.1 bits (77), Expect = 0.048
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +2
Query: 317 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 454
A+IL+PTRELA QI K GGT + + +R+LE
Sbjct: 232 AVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELE 277
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 37.1 bits (82), Expect = 0.012
Identities = 19/52 (36%), Positives = 32/52 (61%)
Frame = +3
Query: 102 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGK 257
V TF D++L + L I + +P+ +Q+ AI + RD++A AQ+G+GK
Sbjct: 150 VNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGK 201
Score = 35.1 bits (77), Expect = 0.048
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +2
Query: 317 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 454
A+IL+PTRELA QI K GGT + + +R+LE
Sbjct: 232 AVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELE 277
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 37.1 bits (82), Expect = 0.012
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +2
Query: 320 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 454
L++APTREL QQI + L +C GG+ V + I +L+
Sbjct: 606 LVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELK 650
Score = 35.5 bits (78), Expect = 0.036
Identities = 18/59 (30%), Positives = 32/59 (54%)
Frame = +3
Query: 87 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKLL 263
D + ++ + L ++L + +EKP IQ +A+ + GRD I A++G+GK L
Sbjct: 523 DVPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTL 581
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 36.3 bits (80), Expect = 0.021
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Frame = +3
Query: 12 PKMGHRRIKVVTMDL--REWTLGHLHTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAI 185
P + R++ DL ++W + D ++ F DM +L + G +P+ I
Sbjct: 113 PPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPTPI 172
Query: 186 QQRAIMPCIQGRDVIAQAQSGTGKLLL 266
Q + + + GRD+I A +G+GK L+
Sbjct: 173 QVQGLPVILAGRDMIGIAFTGSGKTLV 199
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 36.3 bits (80), Expect = 0.021
Identities = 16/40 (40%), Positives = 27/40 (67%)
Frame = +3
Query: 138 LLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGK 257
+LR + GF++P+ IQ++AI + GR+ A A +G+GK
Sbjct: 152 ILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGK 191
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 224 CYRSSPVRNWKTATFSISILQQIDT-SIRECQALILAPTRELAQQ 355
C+ +P + KT F +L ++ S +A+IL+P RELA Q
Sbjct: 181 CFACAPTGSGKTFAFICPMLIKLKRPSTDGIRAVILSPARELAAQ 225
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 36.3 bits (80), Expect = 0.021
Identities = 18/59 (30%), Positives = 32/59 (54%)
Frame = +3
Query: 87 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKLL 263
D + ++ + L ++L + +EKP IQ +A+ + GRD I A++G+GK L
Sbjct: 390 DVPRPIQFWHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTL 448
Score = 34.7 bits (76), Expect = 0.063
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 320 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 454
L++APTREL QQI + L C GG+ V + I +L+
Sbjct: 473 LVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISELK 517
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 34.3 bits (75), Expect = 0.083
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +3
Query: 108 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGK 257
++ + L + + + GF++PS Q I + G+DVI A++G+GK
Sbjct: 81 SWKSLGLSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGK 130
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 33.9 bits (74), Expect = 0.11
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +2
Query: 296 TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVR 433
T R + ++L PTREL++Q+ +V ++ H + GG+ +R
Sbjct: 185 TKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSRIR 230
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 32.3 bits (70), Expect = 0.34
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Frame = +2
Query: 233 SSPVRNWKTATFSISILQQIDT--------SIRECQALILAPTRELAQQIQKVVIALGDH 388
S+ + KTA+F + I+ + T R A++LAPTREL Q++ LG
Sbjct: 153 SADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKG 212
Query: 389 LNAKCHACIGG 421
L K +GG
Sbjct: 213 LPFKTALVVGG 223
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 32.3 bits (70), Expect = 0.34
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Frame = +2
Query: 233 SSPVRNWKTATFSISILQQIDT--------SIRECQALILAPTRELAQQIQKVVIALGDH 388
S+ + KTA+F + I+ + T R A++LAPTREL Q++ LG
Sbjct: 16 SADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKG 75
Query: 389 LNAKCHACIGG 421
L K +GG
Sbjct: 76 LPFKTALVVGG 86
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 31.9 bits (69), Expect = 0.45
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +3
Query: 102 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKLL 263
V F + + ++ RG+ + + +Q AI + GRD++ A++G+GK L
Sbjct: 70 VRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTL 123
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 31.9 bits (69), Expect = 0.45
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 308 ECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDIRQLE 454
+ +I++PTREL+ QI KV L N +GG V D+ LE
Sbjct: 90 QVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLE 139
Score = 31.5 bits (68), Expect = 0.59
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +3
Query: 126 LKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKLLLSLYRF 281
L E+++ + GFE + +Q I +DV+ A +G+GK L L F
Sbjct: 23 LSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPF 74
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 31.5 bits (68), Expect = 0.59
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +3
Query: 126 LKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKLLLSLYRF 281
L E+++ + GFE + +Q I +DV+ A +G+GK L L F
Sbjct: 24 LSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPF 75
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 308 ECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVRED 439
+ +I++PTREL+ QI KV A+ AKC N E+
Sbjct: 91 QVMGVIISPTRELSAQIHKVARAVRLDF-AKCREVEADMNTLEE 133
>At3g49970.1 68416.m05464 phototropic-responsive protein, putative
similar to root phototropism RPT2 [Arabidopsis thaliana]
gi|6959488|gb|AAF33112, a signal transducer of
phototropic response PMID:10662859
Length = 526
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/59 (23%), Positives = 33/59 (55%)
Frame = -3
Query: 227 NIASLDARHYCALLDCRRFFKTIGVYASQQFFFEVHVIEGFDNLIPVGVQVSQGPFPEV 51
NI+ ++ + C+L+DC++ + + +A+Q F+ + + D+ P + + P PE+
Sbjct: 373 NISEVEKKKVCSLMDCKKLSRDVYAHAAQNDRFQEN-LSNSDSPAPATAEKTLSP-PEL 429
>At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 691
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/53 (26%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Frame = +2
Query: 269 SISILQQIDTSIREC-QALILAPTRELA-QQIQKVVIALGDHLNAKCHACIGG 421
+++ L+++ +++EC +A+ + P+ A Q++ + + LG+ NA+ H C G
Sbjct: 263 ALTALRRLGEAVKECLEAVRIDPSYSRAHQRLASLYLRLGEAENARRHICFSG 315
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 308 ECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDIRQLE 454
+ +I++PTREL+ QI V L N +GG V+ D++ +E
Sbjct: 90 QVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIE 139
>At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 376
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 320 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT 424
LILA T + + K ++ LG ++NA C GGT
Sbjct: 46 LILACTNDDLYDVAKTLLELGSNVNAYRSGCNGGT 80
>At2g04620.1 68415.m00470 cation efflux family protein potential
member of the cation diffusion facilitator (CDF) family,
or cation efflux (CE) family, see PMID:11500563
Length = 798
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -3
Query: 476 HHVHEHHSPVGEYLHGHWCHQCKHGI*HSSDHQELS 369
HH H+HH + H H +C H H +HQ S
Sbjct: 594 HHEHDHH----HHSHSHKHEECNHN--HDHEHQSHS 623
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -3
Query: 476 HHVHEHHSPVGEYLHGHWCHQCKHGI*HSSDHQ 378
+H HEH S H H +C H H SDHQ
Sbjct: 614 NHDHEHQS------HSHNHEECNHNHDHHSDHQ 640
>At4g24430.1 68417.m03502 expressed protein
Length = 487
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -2
Query: 498 IYTTLEC-PPRT*TPLSSWRISSRTLVPPMQAWHLAF 391
++T L C P +T PLS W+ + ++ +Q+W F
Sbjct: 130 VFTYLNCLPDKTSDPLSLWQDAKNQMLTEVQSWPYDF 166
>At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 682
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Frame = +2
Query: 203 ALHPRTRCYRSSPVRNWKTATFSISILQQIDTSIREC-QALILAPTRELA-QQIQKVVIA 376
+L P YRS+ + A + S +++ +++EC +A+ P+ A Q++ + +
Sbjct: 239 SLSPENPAYRSN-----RAAALAAS--GRLEEAVKECLEAVRCDPSYARAHQRLASLYLR 291
Query: 377 LGDHLNAKCHACIGG 421
LG+ NA+ H C+ G
Sbjct: 292 LGEAENARRHLCVSG 306
>At5g18910.1 68418.m02246 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 511
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -3
Query: 506 IISYTRPWSAHHVHEHHSPVGEYLHGHW 423
++S + HH H HH G +GHW
Sbjct: 90 VVSTSDSSETHHHHHHHHSSGGPNNGHW 117
>At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 496
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/41 (39%), Positives = 17/41 (41%)
Frame = -3
Query: 488 PWSAHHVHEHHSPVGEYLHGHWCHQCKHGI*HSSDHQELSP 366
P S HH H HH + H H H H H H LSP
Sbjct: 327 PHSKHHHHHHH-----HHHHHHHHHHNH---HHHHHHNLSP 359
>At3g53720.1 68416.m05934 cation/hydrogen exchanger, putative
(CHX20) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 842
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 515 TTIIISYTRPWSAHHVHEHHSPVG 444
T II+ + + W+A H H HH G
Sbjct: 572 TMIILPFHKRWNADHGHSHHHQDG 595
>At1g01950.1 68414.m00113 armadillo/beta-catenin repeat family
protein / kinesin motor family protein similar to
kinesin-like protein GB:CAB41097 GI:5541717 from
[Arabidopsis thaliana]; contains Pfam profiles PF00225:
Kinesin motor domain, PF00514:
Armadillo/beta-catenin-like repeat
Length = 894
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/57 (22%), Positives = 26/57 (45%)
Frame = -3
Query: 569 FSSASSRTKSLMVLA*KRTTIIISYTRPWSAHHVHEHHSPVGEYLHGHWCHQCKHGI 399
F+ SR + V + R+ +I PW H ++ +P+ ++ CH +H +
Sbjct: 788 FAKCESRATTQGVKS-GRSLLIEDGALPWIVQHANDEAAPIRRHIELALCHLAQHEV 843
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +2
Query: 305 RECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 421
R L+L PTRELA+Q+ A G L GG
Sbjct: 173 RSPSVLVLLPTRELAKQVAADFDAYGGSLGLSSCCLYGG 211
>At4g26510.2 68417.m03818 uracil phosphoribosyltransferase / UMP
pyrophosphorylase (UPT1) nearly identical to SP|O65583
Uracil phosphoribosyltransferase (EC 2.4.2.9) (UMP
pyrophosphorylase) (UPRTase) {Arabidopsis thaliana}
Length = 402
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 123 NLKEELLRGIYAYGFEKPSAIQQRAIMPCIQ 215
NL EE L ++ Y F+ P A ++ C++
Sbjct: 22 NLTEEELARVHEYNFDHPDAFDTEHLLSCME 52
>At4g26510.1 68417.m03817 uracil phosphoribosyltransferase / UMP
pyrophosphorylase (UPT1) nearly identical to SP|O65583
Uracil phosphoribosyltransferase (EC 2.4.2.9) (UMP
pyrophosphorylase) (UPRTase) {Arabidopsis thaliana}
Length = 402
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 123 NLKEELLRGIYAYGFEKPSAIQQRAIMPCIQ 215
NL EE L ++ Y F+ P A ++ C++
Sbjct: 22 NLTEEELARVHEYNFDHPDAFDTEHLLSCME 52
>At1g76010.1 68414.m08825 expressed protein
Length = 350
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 17 NGPSKDQGSYDGPPGMDPG 73
+GPS+ +G YDGP G G
Sbjct: 299 DGPSQGRGGYDGPQGRGRG 317
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,595,877
Number of Sequences: 28952
Number of extensions: 396555
Number of successful extensions: 1275
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1263
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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