Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30049
(727 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 112 4e-26
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 105 6e-24
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 64 3e-11
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 56 5e-09
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 53 5e-08
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 53 5e-08
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 51 2e-07
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 50 3e-07
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 47 2e-06
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 46 6e-06
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 44 2e-05
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 44 2e-05
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 42 9e-05
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 40 4e-04
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 39 6e-04
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 39 8e-04
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 36 0.004
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 36 0.004
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 33 0.042
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 31 0.13
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 29 0.51
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha... 28 1.2
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 27 2.1
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 27 2.7
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 27 3.6
SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces ... 27 3.6
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 26 4.8
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P... 26 4.8
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 26 4.8
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual 26 6.3
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 26 6.3
SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|... 25 8.3
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 112 bits (270), Expect = 4e-26
Identities = 51/67 (76%), Positives = 62/67 (92%)
Frame = +2
Query: 254 KTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVR 433
KTATFSIS+LQ+IDTS+++CQALILAPTRELAQQIQKVV+ALGD +N +CHACIGGT VR
Sbjct: 69 KTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVR 128
Query: 434 EDIRQLE 454
+D+ L+
Sbjct: 129 DDMAALQ 135
Score = 103 bits (246), Expect = 3e-23
Identities = 46/60 (76%), Positives = 55/60 (91%)
Frame = +3
Query: 78 LHTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGK 257
+ T++D+V++TFDDMNLK ELLRGIYAYGFE+PSAIQQRAIMP + RDV+AQAQSGTGK
Sbjct: 10 IETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGK 69
Score = 31.1 bits (67), Expect = 0.17
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +1
Query: 487 GRVYDMIIVVRFHANTIKLFVLDEADE 567
GRV+DMI + +++FVLDEADE
Sbjct: 146 GRVHDMIQRRALPTDAVQMFVLDEADE 172
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 105 bits (252), Expect = 6e-24
Identities = 48/67 (71%), Positives = 58/67 (86%)
Frame = +2
Query: 254 KTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVR 433
KTATFSI ILQ ID S+R+ QALIL+PTRELA QIQ VV+ALGDH+N +CHACIGGT+V
Sbjct: 71 KTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVG 130
Query: 434 EDIRQLE 454
DI++L+
Sbjct: 131 NDIKKLD 137
Score = 84.6 bits (200), Expect = 1e-17
Identities = 38/52 (73%), Positives = 46/52 (88%)
Frame = +3
Query: 102 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGK 257
V +F++MNLKE+LLRGIYAYG+E PSA+Q RAI+ +GRDVIAQAQSGTGK
Sbjct: 20 VSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGK 71
Score = 29.1 bits (62), Expect = 0.68
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 487 GRVYDMIIVVRFHANTIKLFVLDEADE 567
GRV DMI +K+ +LDEADE
Sbjct: 148 GRVTDMIRRRNLRTRNVKMLILDEADE 174
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 63.7 bits (148), Expect = 3e-11
Identities = 32/66 (48%), Positives = 41/66 (62%)
Frame = +2
Query: 254 KTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVR 433
KTA F I L+++DT + Q LIL PTRELA Q +V LG H+N K GGT +R
Sbjct: 94 KTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLR 153
Query: 434 EDIRQL 451
+DI +L
Sbjct: 154 DDIIRL 159
Score = 60.1 bits (139), Expect = 3e-10
Identities = 26/49 (53%), Positives = 37/49 (75%)
Frame = +3
Query: 111 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGK 257
F+D LK ELL GI+ GFE+PS IQ+ +I + GRD++A+A++GTGK
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGK 94
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 56.0 bits (129), Expect = 5e-09
Identities = 26/54 (48%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Frame = +3
Query: 102 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQG--RDVIAQAQSGTGK 257
V++F+++ LK ELL+GIY+ F+KPS IQ++A+ + R++I Q+QSGTGK
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGK 166
Score = 50.0 bits (114), Expect = 3e-07
Identities = 22/49 (44%), Positives = 35/49 (71%)
Frame = +2
Query: 254 KTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 400
KTA F++++L ++D S+ + QA+ LAP+RELA+QI VV +G + K
Sbjct: 166 KTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVK 214
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 487 GRVYDMIIVVRFHANTIKLFVLDEAD 564
G V D++ + A IK+FVLDEAD
Sbjct: 239 GTVMDLMKRRQLDARDIKVFVLDEAD 264
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 52.8 bits (121), Expect = 5e-08
Identities = 22/51 (43%), Positives = 35/51 (68%)
Frame = +3
Query: 105 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGK 257
+TF D NL L R I+ FEKP+++Q I ++G+D++AQA++G+GK
Sbjct: 14 KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGK 64
Score = 36.3 bits (80), Expect = 0.004
Identities = 28/65 (43%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Frame = +2
Query: 254 KTATFSISILQ------QIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 415
KTA + I IL+ QID + R AL+L PTRELAQQ+ V+ + L A C I
Sbjct: 64 KTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVL----EKLTAFCSKHI 119
Query: 416 GGTNV 430
NV
Sbjct: 120 RFINV 124
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 52.8 bits (121), Expect = 5e-08
Identities = 24/57 (42%), Positives = 36/57 (63%)
Frame = +3
Query: 102 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKLLLSL 272
+E F D+ L E + + I GFE + IQ+R+I P + GRDV+ A++G+GK L L
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFL 144
Score = 27.9 bits (59), Expect = 1.6
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +2
Query: 320 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQL 451
+I++PTRELA QI V L + + IGG N R + +L
Sbjct: 165 IIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKL 208
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 50.8 bits (116), Expect = 2e-07
Identities = 27/49 (55%), Positives = 30/49 (61%)
Frame = +3
Query: 111 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGK 257
F D LK ELLR I GFE PS +QQ I I G DV+ QA+SG GK
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGK 101
Score = 42.3 bits (95), Expect = 7e-05
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +2
Query: 254 KTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNV 430
KTA F +S LQQI+ E L+L TRELA QI+ +L + + GG N+
Sbjct: 101 KTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINI 160
Query: 431 REDI 442
++D+
Sbjct: 161 KQDM 164
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 50.0 bits (114), Expect = 3e-07
Identities = 21/49 (42%), Positives = 33/49 (67%)
Frame = +3
Query: 111 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGK 257
F M L + LLR I+ GF+ P+ IQ++ I ++GRDV+ A++G+GK
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGK 119
Score = 39.1 bits (87), Expect = 6e-04
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Frame = +2
Query: 254 KTATFSISILQQIDTSIREC--QALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 427
KTA F I +++ + +++ +ALIL+P RELA Q KVV + + A +GG +
Sbjct: 119 KTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVS 178
Query: 428 VREDIRQL 451
+ E L
Sbjct: 179 LEEQFSLL 186
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 47.2 bits (107), Expect = 2e-06
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Frame = +2
Query: 224 CYRSSPVRNWKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKC 403
C + + KTA F++ I+++ ALIL PTRELA QI + ALG +LN K
Sbjct: 47 CIGGAKTGSGKTAAFALPIIEKWSKDPSGIFALILTPTRELAIQIDEQFAALGANLNLKH 106
Query: 404 HACIGGTN-VREDI 442
+GG + +R+ I
Sbjct: 107 ALIVGGMDMIRQSI 120
Score = 34.3 bits (75), Expect = 0.018
Identities = 15/51 (29%), Positives = 30/51 (58%)
Frame = +3
Query: 105 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGK 257
++F D+ + L+ + A +P+ IQ+ I ++GR+ I A++G+GK
Sbjct: 7 KSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGK 57
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 46.0 bits (104), Expect = 6e-06
Identities = 19/50 (38%), Positives = 31/50 (62%)
Frame = +3
Query: 108 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGK 257
+F MNL +L+G+ GFE P+ IQ + I + G+D++ A +G+GK
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGK 309
Score = 39.1 bits (87), Expect = 6e-04
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Frame = +2
Query: 254 KTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT 424
KTA F + IL+++ + + LIL PTRELA Q V + + CIGG
Sbjct: 309 KTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGL 368
Query: 425 NVREDIRQL 451
+++ ++L
Sbjct: 369 SLKLQEQEL 377
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 44.4 bits (100), Expect = 2e-05
Identities = 21/55 (38%), Positives = 33/55 (60%)
Frame = +3
Query: 93 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGK 257
++ +TF ++ + +EL GF+ P+ IQQ AI + RDVI AQ+G+GK
Sbjct: 42 NEAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGK 96
Score = 43.2 bits (97), Expect = 4e-05
Identities = 20/59 (33%), Positives = 36/59 (61%)
Frame = +2
Query: 254 KTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 430
KTA F++ ++Q++ + A++LAPTRELA QI + A+G + + +GG ++
Sbjct: 96 KTAAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDM 154
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 44.0 bits (99), Expect = 2e-05
Identities = 22/62 (35%), Positives = 36/62 (58%)
Frame = +3
Query: 87 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKLLL 266
D + V ++ L + + I + G+EKP++IQ +AI GRDVI A++G+GK +
Sbjct: 412 DCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIA 471
Query: 267 SL 272
L
Sbjct: 472 FL 473
Score = 30.3 bits (65), Expect = 0.29
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 317 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 454
A+I+ PTRELA QI + LN + GG +++ I L+
Sbjct: 494 AIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLK 539
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 41.9 bits (94), Expect = 9e-05
Identities = 19/54 (35%), Positives = 32/54 (59%)
Frame = +3
Query: 102 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKLL 263
V TF++ +L+ + GFE P+ IQQ+A + GRD++ + +G+GK L
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTL 174
Score = 30.7 bits (66), Expect = 0.22
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = +2
Query: 320 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQL 451
L+LAPTRELA QIQ+ G + GG IR L
Sbjct: 199 LVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDL 242
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 39.9 bits (89), Expect = 4e-04
Identities = 18/61 (29%), Positives = 36/61 (59%)
Frame = +3
Query: 108 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKLLLSLYRFYN 287
+F +N+ + L + A GF+K + +Q AI ++ +D++ +A +G+GK L L ++
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFD 61
Query: 288 K 290
K
Sbjct: 62 K 62
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = +2
Query: 293 DTSIRECQALILAPTRELAQQIQKV 367
DT ALI+APTRELA QI V
Sbjct: 67 DTDETGLGALIVAPTRELATQIFNV 91
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 39.1 bits (87), Expect = 6e-04
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = +3
Query: 102 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGK 257
V F L LL+ I G+ +P+ +Q+ +I GRD++A AQ+G+GK
Sbjct: 168 VNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGK 219
Score = 30.3 bits (65), Expect = 0.29
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +2
Query: 320 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 454
LILAPTREL QI + + A GG ++R IRQ++
Sbjct: 259 LILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQID 303
Score = 26.2 bits (55), Expect = 4.8
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1
Query: 478 ALQGRVYDMIIVVRFHANTIKLFVLDEAD 564
A GR+ D+I R IK VLDEAD
Sbjct: 311 ATPGRLVDLIDRGRISLANIKFLVLDEAD 339
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 38.7 bits (86), Expect = 8e-04
Identities = 17/57 (29%), Positives = 35/57 (61%)
Frame = +3
Query: 87 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGK 257
D + +++ L E+L+ + +++PS+IQ+ AI +Q +D+I A++G+GK
Sbjct: 243 DLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGK 299
Score = 36.7 bits (81), Expect = 0.003
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +2
Query: 317 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQL 451
A++LAPTRELAQQIQ + L +C + +GG E Q+
Sbjct: 328 AVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQM 372
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 36.3 bits (80), Expect = 0.004
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +3
Query: 102 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKLL 263
V + +L E+L + GF KP IQ I G D+I +A +G+GK L
Sbjct: 121 VSAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTL 174
Score = 36.3 bits (80), Expect = 0.004
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +2
Query: 254 KTATFSISILQQI--DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 427
KT F I IL+ + + QAL++APTRELA QI + + N + + GG
Sbjct: 172 KTLAFGIPILEHCLRNVDAKYVQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLA 231
Query: 428 VREDIRQL 451
V++ R L
Sbjct: 232 VQKQQRLL 239
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 36.3 bits (80), Expect = 0.004
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Frame = +2
Query: 254 KTATFSISILQQID----TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 421
KT F + +++ + TS+ AL+++PTRELA Q + ++ +G + IGG
Sbjct: 89 KTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGG 148
Query: 422 TNVREDIRQL 451
N +E+ +L
Sbjct: 149 NNYKEEKERL 158
Score = 31.5 bits (68), Expect = 0.13
Identities = 15/56 (26%), Positives = 31/56 (55%)
Frame = +3
Query: 96 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKLL 263
+ V+ F ++ L + + F + IQ++ I ++GRD++ A++G+GK L
Sbjct: 36 ETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTL 91
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 33.1 bits (72), Expect = 0.042
Identities = 16/49 (32%), Positives = 30/49 (61%)
Frame = +3
Query: 111 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGK 257
FD++++ +L G+ Y ++P+ IQ + GRDV+ A++G+GK
Sbjct: 169 FDELDVSAKLREGLKNY--KEPTPIQAATWPYLLAGRDVVGIAETGSGK 215
Score = 28.3 bits (60), Expect = 1.2
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = +2
Query: 254 KTATFSISILQQID---TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT 424
KT F I LQ ++ + + L+++PTRELA Q + + +L N K GG
Sbjct: 215 KTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGA 274
Query: 425 NVREDIR 445
E R
Sbjct: 275 PKSEQAR 281
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 31.5 bits (68), Expect = 0.13
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +2
Query: 236 SPVRNWKTATFSISILQQIDTSIRE-CQALILAPTRELAQQIQK 364
+P + KT + ILQ++ + +A+I+APTREL +QI +
Sbjct: 90 APTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQIYR 133
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 29.5 bits (63), Expect = 0.51
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Frame = +2
Query: 272 ISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD----HLNAKCHACIGGTNVRED 439
I + + + T A+I+APTREL QQI V L + H C+ IGG + +
Sbjct: 204 IRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNV-IGGEKKKSE 262
>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 496
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 481 VPTTYMNTTLQLANIFTDIGATNASMAFSIQVITKSYHHL 362
+PT Y+ L +FTD+ + N +F I I K + HL
Sbjct: 413 IPTDYIKKFLTAKKLFTDLPSNNELFSF-IHNIPKEFLHL 451
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 27.5 bits (58), Expect = 2.1
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +2
Query: 233 SSPVRNWKTATFSISILQQID-TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHA 409
S+ + KT ++ I I+Q + ++ + +++ PTREL Q+ K + A
Sbjct: 179 SAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTFEYYMSGAGLQVCA 238
Query: 410 CIGGTNVREDIRQL 451
G ++R + QL
Sbjct: 239 WTGQKSLRHETYQL 252
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 277 DSTTNRYKHS*MSSFDPGSHKRAGPTNSEGGDSS 378
D+ TNR + SSFD S P+N++G ++
Sbjct: 487 DAWTNRKRPGYSSSFDGSSQSTFNPSNNDGAHNT 520
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 26.6 bits (56), Expect = 3.6
Identities = 9/29 (31%), Positives = 20/29 (68%)
Frame = -2
Query: 636 NQLTNHLEDHQWIWSLENLWNNIFISFIK 550
N + + D++++WSLE+++ N +S +K
Sbjct: 1402 NSIISPNADYEYVWSLEDVFENEDVSSLK 1430
>SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 396 LNAMLALVAPMSVKIFANWRVVFMYVVGT 482
L AML L + ++ W VVFM V+ T
Sbjct: 122 LQAMLILTIKLGIRRHVEWPVVFMGVLAT 150
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +3
Query: 90 WDQVVETFDDMNLKEELLRGIYAYGF 167
WD E FDD N + +GI+ F
Sbjct: 286 WDPQCEYFDDCNSDQTAFKGIFMQSF 311
>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 389
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 391 QVITKSYHHLLNLLGQLSCGSQDQ 320
+++ KSYH+L N QLS ++DQ
Sbjct: 165 ELVDKSYHNLHNAWSQLSREAKDQ 188
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 595 PDPLMVFKMVGQLIVSSQ 648
PDPL+ FK+ G I SS+
Sbjct: 928 PDPLLTFKLFGLFITSSK 945
>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
Length = 613
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 356 IQKVVIALGDHLNAKCHACIGGTNVRED 439
++ + A+ DHL+ + CIG N+ ED
Sbjct: 134 VEMIRRAISDHLDLLNNCCIGIANLNED 161
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = -1
Query: 451 QLANIFTDIGAT---NASMAFSIQVITKSYHHLLNLL 350
+L NIFT + N+ FS+ +++++Y H NLL
Sbjct: 598 KLQNIFTTLYTAWCHNSIAVFSLCLLSQNYEHAANLL 634
>SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|chr
3|||Manual
Length = 258
Score = 25.4 bits (53), Expect = 8.3
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 651 ILT*NNQLTNHLEDHQWIW 595
+L N+L++HL D QW W
Sbjct: 175 LLKAENKLSSHLGDQQWGW 193
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,300,343
Number of Sequences: 5004
Number of extensions: 73267
Number of successful extensions: 285
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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