Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30047
(794 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0924 + 7301611-7301737,7301890-7302518 32 0.60
02_03_0205 - 16411707-16412759,16413077-16413256,16413960-164144... 31 1.1
11_04_0383 - 17004520-17005150,17005205-17005327,17005641-17007142 30 1.8
10_08_0235 - 16076133-16076411,16076457-16076972 30 2.4
02_03_0214 + 16504237-16504251,16504447-16505055 30 2.4
05_01_0263 + 2020328-2020543,2020715-2021039,2021612-2022063 29 3.2
04_01_0369 + 4840371-4841294,4841921-4842559 29 4.3
10_02_0096 - 5248369-5248479,5248562-5248604,5249093-5249178,525... 28 7.4
11_04_0313 + 16270807-16272271,16272713-16274140,16274289-16274788 28 9.8
11_01_0145 + 1204021-1204296,1204430-1204492,1204667-1204795,120... 28 9.8
07_03_1020 + 23344657-23346969 28 9.8
06_02_0244 - 13445023-13445400,13445495-13446823 28 9.8
06_01_1079 + 8832779-8833960 28 9.8
05_03_0577 + 15671570-15672432,15672571-15672785,15672825-156729... 28 9.8
02_05_0669 - 30755406-30756081,30756869-30756933,30757040-307572... 28 9.8
01_01_1154 - 9178427-9178738,9179819-9180874 28 9.8
01_01_1152 + 9170628-9171899 28 9.8
>01_01_0924 + 7301611-7301737,7301890-7302518
Length = 251
Score = 31.9 bits (69), Expect = 0.60
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Frame = -1
Query: 344 REELWASSPHREVHIKFLFTFLKGEATASEKVIRHASSHSSGRWGCFLSHSLIAAKSCAL 165
R E W R V + LFTFL + + ++ +G + ++ A A+
Sbjct: 9 RGEAWEPGCLRAVAGELLFTFLFVFIGVASTITAGKAAGGAGEAAAVTAAAMAQALVVAV 68
Query: 164 VLTSSFNSSRIFFHSSPEG*IRVAVDA-ISLLQ---YVTIQF-GTSCFVILFKCLTG 9
+ T+ F+ S H +P + +AV I+L + YV Q G+S +L +CLTG
Sbjct: 69 LATAGFHVSG--GHLNPAVTLSLAVGGHITLFRSALYVAAQLAGSSLACLLLRCLTG 123
>02_03_0205 -
16411707-16412759,16413077-16413256,16413960-16414498,
16414798-16414825
Length = 599
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 175 DLAAIKEWLRKQPHLPDEWEDACLMTFSEA 264
D+ +I+EW QPHLP+E ++T EA
Sbjct: 129 DVLSIEEWSLIQPHLPNETNTKIIVTTREA 158
>11_04_0383 - 17004520-17005150,17005205-17005327,17005641-17007142
Length = 751
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = -2
Query: 262 PRRKSSGTRLPTHLVDGVAFSA-TP*LQLSPVPWC*HPHSIPRGFSSTVPRKAESGSP 92
P ++ LP H+ + VA ++S V WC + + GFS V A +G P
Sbjct: 559 PLAAATEVALPLHVANEVASPLQAAAAKVSDVHWCRRSNEVKHGFSQLVAGSATAGGP 616
>10_08_0235 - 16076133-16076411,16076457-16076972
Length = 264
Score = 29.9 bits (64), Expect = 2.4
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = -1
Query: 329 ASSPHREVHIKFLF--TFLKGEATASEKVIRHASSHSSGRWGCFLSHSLIAAKSCALVLT 156
A SPH VH+ ++L+G A V+RHAS S + S A + +
Sbjct: 2 ACSPHAAVHVAMTLDASYLRGTIAAVLSVLRHASCPGSVHFHFLAVSSEAAVRELRDTVR 61
Query: 155 SSFNS 141
+SF S
Sbjct: 62 ASFPS 66
>02_03_0214 + 16504237-16504251,16504447-16505055
Length = 207
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 175 DLAAIKEWLRKQPHLPDEWEDACLMTFSEA 264
D+++I+EW +PHLP E ++T EA
Sbjct: 128 DVSSIEEWSLIKPHLPSETNTKIIVTTREA 157
>05_01_0263 + 2020328-2020543,2020715-2021039,2021612-2022063
Length = 330
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = -1
Query: 359 GYVSVREELWASSPHREVHIKFLFTFLKGEATASEKVIRHASSHSSGRWGC 207
G+VS +E+ ++ PH E K L + +E+++ + +HS G C
Sbjct: 151 GFVSKEDEVLSNVPHPEFGAKDLLKNFTAKGFTAEEMVTLSGAHSIGTSHC 201
>04_01_0369 + 4840371-4841294,4841921-4842559
Length = 520
Score = 29.1 bits (62), Expect = 4.3
Identities = 10/41 (24%), Positives = 24/41 (58%)
Frame = +1
Query: 97 TLIQPSGELWKKIREELNEDVNTRAQDLAAIKEWLRKQPHL 219
T++ P+G+ W+K+R+ L ++ + A + + + + HL
Sbjct: 116 TIMSPAGDQWRKMRQVLTSEILSPAMERRMLGRRVEEADHL 156
>10_02_0096 -
5248369-5248479,5248562-5248604,5249093-5249178,
5250089-5250153,5252539-5252747,5253077-5253188,
5253271-5253322,5254593-5254685,5254997-5255146,
5255223-5255327,5255858-5255891,5256145-5256281,
5257691-5257819,5257899-5257977,5258081-5258156,
5258981-5259070,5259181-5259259,5259397-5259431,
5260722-5260811,5260913-5261027
Length = 629
Score = 28.3 bits (60), Expect = 7.4
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Frame = +3
Query: 558 VYVLDASILMPSHLRQDFTSSAEEI-LSFVYRKLIQ*NWKE-IHV--YQRISP 704
V VL+A+ + P+H +QDF + I L R++I WKE H+ YQ + P
Sbjct: 421 VGVLEANFIEPAHDKQDFERTPLFIRLEAKLRQIILDYWKEKCHLIGYQPVDP 473
>11_04_0313 + 16270807-16272271,16272713-16274140,16274289-16274788
Length = 1130
Score = 27.9 bits (59), Expect = 9.8
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +1
Query: 157 VNTRAQDLAAIKEWLRKQPHLPDEWEDACLMTFSEAVASPLRNVKRNLICTSR*GLLAQS 336
V R +D+ ++EW +QP P E AV PL + + N + L++ +
Sbjct: 837 VKLRIEDMTVLEEWTEQQPCFPCLEELTVRNCPKLAVLPPLHHARVNRMHIEGLPLISFN 896
Query: 337 SSR 345
SSR
Sbjct: 897 SSR 899
>11_01_0145 +
1204021-1204296,1204430-1204492,1204667-1204795,
1205778-1205834,1205915-1206213,1206539-1206630,
1206747-1206961,1207142-1207325,1207447-1207541,
1208572-1208628,1209372-1209426,1209955-1210079
Length = 548
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +1
Query: 43 LVPNWIVTYCKSEMASTATLIQPSGELWKKIREELNEDVNTRAQ 174
+VPNW++ ++ +TA LI E +I E + + V+T+++
Sbjct: 142 VVPNWLMKKTPLKLGATAGLILIGDEKANQILEAVRDVVHTKSK 185
>07_03_1020 + 23344657-23346969
Length = 770
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = -1
Query: 311 EVHIKFLFTFLKGEATASEKVIRHASSHSSGRWGC 207
EVH LF F +G A R A G WGC
Sbjct: 238 EVHGAGLFMFARGTARGVAPKARIAMYKCGGNWGC 272
>06_02_0244 - 13445023-13445400,13445495-13446823
Length = 568
Score = 27.9 bits (59), Expect = 9.8
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = +3
Query: 297 LDMYFTMRAACPEFFANRDVTRPELMDLLNRAQGPTLPGLTPQGRRVTIARALDKNLD 470
L Y R C E NRD E+ D++ A+G LPG + T++ +D++LD
Sbjct: 511 LTPYDIGRILCRET-VNRD---SEIEDIVQEAEGHVLPGSSEVIFLETVSEIIDRHLD 564
>06_01_1079 + 8832779-8833960
Length = 393
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = +1
Query: 28 RITKQLVPNWIVTYCKSEMASTATLIQPSGELWKKIREELNEDVNTRA--QDLAAIKEW 198
R T L P+W ++ K E ++ I P E W I + + + A +L ++ W
Sbjct: 201 RFTCSLPPSWAKSHAKMEEFNSTPYISPYSERWAAIGTDADAEKRAVAVVHELLSLTLW 259
>05_03_0577 + 15671570-15672432,15672571-15672785,15672825-15672954,
15672990-15673794,15674505-15674715,15674829-15675436
Length = 943
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 187 IKEWLRKQPHLPDEWEDACLMTFSEAVASPLRNVKRNLICTS 312
I E Q H+ ED L+TFS A R R +ICT+
Sbjct: 899 IDETYLVQGHILKHGEDGSLITFSPAPQMKSRCQMRGIICTT 940
>02_05_0669 -
30755406-30756081,30756869-30756933,30757040-30757209,
30757313-30757496,30758536-30758619,30758740-30758938,
30760200-30760441,30761811-30762053
Length = 620
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 308 VHIKFLFTFLKGEATASEKVIRHASSHSSGRWGCFLS 198
+H++ L++ L G A K R A+ SGR FLS
Sbjct: 487 LHLRLLYSQLPGYAVVQSKWARGAARPPSGRSSSFLS 523
>01_01_1154 - 9178427-9178738,9179819-9180874
Length = 455
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = -1
Query: 269 ATASEKVIRHASSHSSGRWGCFLSHSLIAAKSCA 168
A+A KV+RH+ ++ +G+ G F S SL++ + A
Sbjct: 274 ASAGGKVVRHSDAYDAGKRGGFFS-SLLSGDTAA 306
>01_01_1152 + 9170628-9171899
Length = 423
Score = 27.9 bits (59), Expect = 9.8
Identities = 23/96 (23%), Positives = 40/96 (41%)
Frame = -2
Query: 385 FSRSISSGLVTSLFAKNSGQAALIVKYISSFFLHFSREKLQPRRKSSGTRLPTHLVDGVA 206
F + GL+ + NS ++ +V ++ +HF P S+ P HL+DG A
Sbjct: 166 FVSDATEGLIRDVLPPNSVDSSTVVVLANA--VHFKGTWSLPFHPSATFHAPFHLLDGGA 223
Query: 205 FSATP*LQLSPVPWC*HPHSIPRGFSSTVPRKAESG 98
A + +P+ H + P + +P K G
Sbjct: 224 VRAP--FMTTEIPFERHVAAFPGFTALKLPYKNVGG 257
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,037,559
Number of Sequences: 37544
Number of extensions: 512476
Number of successful extensions: 1534
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1534
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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