Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30041
         (747 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    26   0.43 
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   5.3  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   9.3  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   9.3  

>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 480 YNNYMEYHSRIIDGLRETLYY*DYV 554
           YNNY  Y++   +   + LYY +Y+
Sbjct: 327 YNNYNNYNNNNYNNYNKKLYYKNYI 351


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = +3

Query: 480 YNNYMEYHSRIIDGLRETLYY*DYVDK 560
           YNNY  Y++   +  ++  Y  +Y+++
Sbjct: 334 YNNYNNYNNNYNNNYKKLYYNINYIEQ 360


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 41  WLYAFACTDFRLCNYRV 91
           ++YAF   DFRL  +R+
Sbjct: 357 FIYAFYSADFRLAFWRL 373


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 564 LVYQHNLNNIVFHAIHLLFYYGIP 493
           ++YQ+N N I+      +  YG P
Sbjct: 362 MLYQYNFNIIISEPTERISPYGYP 385


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,881
Number of Sequences: 438
Number of extensions: 5087
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)